BLASTX 7.6.2
Query= RU08436 /QuerySize=443
(442 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G32440.1 | Symbols: | LOCATED IN: chloroplast... 111 3e-025
TAIR9_protein||AT5G32440.2 | Symbols: | LOCATED IN: chloroplast... 111 3e-025
TAIR9_protein||AT1G80040.1 | Symbols: | unknown protein | chr1:... 47 3e-006
TAIR9_protein||AT1G80040.2 | Symbols: | unknown protein | chr1:... 47 3e-006
>TAIR9_protein||AT5G32440.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G80040.1); Has 303 Blast hits to 289 proteins in 67 species:
Archae - 0; Bacteria - 2; Metazoa - 74; Fungi - 21; Plants - 93;
Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink). |
chr5:12077014-12078396 FORWARD
Length = 265
Score = 111 bits (275), Expect = 3e-025
Identities = 62/117 (52%), Positives = 75/117 (64%), Gaps = 19/117 (16%)
Frame = +1
Query: 115 IDQLRALFPDMDNQLLERALEECGNDLDSAIRSLNELRLSSAANKSG--------VASEA 270
+D L A+FPDMD Q+LERA+EECG+DLDSAIR LN+LRL SA S V E
Sbjct: 49 LDHLAAIFPDMDKQILERAIEECGDDLDSAIRCLNQLRLESANKNSDSATNQSPVVIQEP 108
Query: 271 NVQPQAQGAVATNGEVSGNDDRSGQNNLPTQGADWVELFVREMMSASNMDDAKARAS 441
NV+PQ QG+ + N L G +WVELFVREMM+AS+M DAKARA+
Sbjct: 109 NVEPQQQGSA-----------KEEPNVLNLDGTEWVELFVREMMNASDMKDAKARAA 154
>TAIR9_protein||AT5G32440.2 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892);
Has 85 Blast hits to 85 proteins in 12 species: Archae - 0; Bacteria -
0; Metazoa - 1; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:12077014-12078091 FORWARD
Length = 188
Score = 111 bits (275), Expect = 3e-025
Identities = 62/117 (52%), Positives = 75/117 (64%), Gaps = 19/117 (16%)
Frame = +1
Query: 115 IDQLRALFPDMDNQLLERALEECGNDLDSAIRSLNELRLSSAANKSG--------VASEA 270
+D L A+FPDMD Q+LERA+EECG+DLDSAIR LN+LRL SA S V E
Sbjct: 49 LDHLAAIFPDMDKQILERAIEECGDDLDSAIRCLNQLRLESANKNSDSATNQSPVVIQEP 108
Query: 271 NVQPQAQGAVATNGEVSGNDDRSGQNNLPTQGADWVELFVREMMSASNMDDAKARAS 441
NV+PQ QG+ + N L G +WVELFVREMM+AS+M DAKARA+
Sbjct: 109 NVEPQQQGSA-----------KEEPNVLNLDGTEWVELFVREMMNASDMKDAKARAA 154
>TAIR9_protein||AT1G80040.1 | Symbols: | unknown protein |
chr1:30109447-30111051 REVERSE
Length = 249
Score = 47 bits (111), Expect = 3e-006
Identities = 27/84 (32%), Positives = 42/84 (50%)
Frame = +1
Query: 190 DLDSAIRSLNELRLSSAANKSGVASEANVQPQAQGAVATNGEVSGNDDRSGQNNLPTQGA 369
+L +++L + A + S A+ + + +A G + D N PT G
Sbjct: 55 ELTVLVKALEDNGSDFNAAMKSLYSFASSEEKKAEELAAGGAATQETDAVCGGNPPTSGD 114
Query: 370 DWVELFVREMMSASNMDDAKARAS 441
DWVEL VRE++ +S DDAK RA+
Sbjct: 115 DWVELLVREVLQSSGTDDAKVRAA 138
>TAIR9_protein||AT1G80040.2 | Symbols: | unknown protein |
chr1:30110059-30111051 REVERSE
Length = 181
Score = 47 bits (111), Expect = 3e-006
Identities = 27/84 (32%), Positives = 42/84 (50%)
Frame = +1
Query: 190 DLDSAIRSLNELRLSSAANKSGVASEANVQPQAQGAVATNGEVSGNDDRSGQNNLPTQGA 369
+L +++L + A + S A+ + + +A G + D N PT G
Sbjct: 55 ELTVLVKALEDNGSDFNAAMKSLYSFASSEEKKAEELAAGGAATQETDAVCGGNPPTSGD 114
Query: 370 DWVELFVREMMSASNMDDAKARAS 441
DWVEL VRE++ +S DDAK RA+
Sbjct: 115 DWVELLVREVLQSSGTDDAKVRAA 138
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,927,766,881
Number of Sequences: 33410
Number of Extensions: 1927766881
Number of Successful Extensions: 103031243
Number of sequences better than 0.0: 0
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