BLASTX 7.6.2
Query= RU08593 /QuerySize=455
(454 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G12680.1 | Symbols: HUA1 | HUA1 (ENHANCER OF A... 232 1e-061
TAIR9_protein||AT3G02830.1 | Symbols: ZFN1 | ZFN1 (ZINC FINGER P... 86 1e-017
TAIR9_protein||AT3G06410.1 | Symbols: | nucleic acid binding / ... 82 1e-016
TAIR9_protein||AT5G16540.2 | Symbols: ZFN3 | ZFN3 (ZINC FINGER N... 82 2e-016
TAIR9_protein||AT5G16540.3 | Symbols: ZFN3 | ZFN3 (ZINC FINGER N... 82 2e-016
TAIR9_protein||AT5G16540.1 | Symbols: ZFN3 | ZFN3 (ZINC FINGER N... 82 2e-016
TAIR9_protein||AT3G48440.1 | Symbols: | zinc finger (CCCH-type)... 76 9e-015
TAIR9_protein||AT2G47850.1 | Symbols: | zinc finger (CCCH-type)... 74 3e-014
TAIR9_protein||AT2G47850.2 | Symbols: | zinc finger (CCCH-type)... 74 3e-014
TAIR9_protein||AT2G47850.3 | Symbols: | zinc finger (CCCH-type)... 74 3e-014
TAIR9_protein||AT1G04990.2 | Symbols: | zinc finger (CCCH-type)... 55 2e-008
TAIR9_protein||AT1G04990.1 | Symbols: | zinc finger (CCCH-type)... 55 2e-008
TAIR9_protein||AT5G18550.1 | Symbols: | nucleic acid binding / ... 52 2e-007
>TAIR9_protein||AT3G12680.1 | Symbols: HUA1 | HUA1 (ENHANCER OF AG-4 1); RNA
binding | chr3:4025276-4028999 REVERSE
Length = 525
Score = 232 bits (590), Expect = 1e-061
Identities = 102/139 (73%), Positives = 116/139 (83%), Gaps = 2/139 (1%)
Frame = +3
Query: 39 APDAEPGPPGFKRTSEALYHQALLGAHNPIGQMEAWYSTNPLAKRPRFENTS-LPIYPQR 215
A EP PPG KRTSEALY+ LLGAHN IGQ EAWY+T+ KRP+ E+TS LPIYPQR
Sbjct: 115 ASAVEPLPPGVKRTSEALYYPTLLGAHNTIGQTEAWYTTDYFTKRPKLESTSHLPIYPQR 174
Query: 216 PGEKDCVHYMQTRTCKFGEGCKFDHPIWVPDGGIPDWKEVPLVAPSESLPERPGAPDCPY 395
GEKDC HYMQTRTCKFGE C+FDHPIWVP+GGIPDWKE P+V P+E PERPG PDCPY
Sbjct: 175 AGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVV-PNEEYPERPGEPDCPY 233
Query: 396 FLKTQRCKFGLRCKFNHPK 452
++KTQRCK+G +CKFNHP+
Sbjct: 234 YIKTQRCKYGSKCKFNHPR 252
Score = 86 bits (212), Expect = 7e-018
Identities = 40/83 (48%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +3
Query: 204 YPQRPGEKDCVHYMQTRTCKFGEGCKFDHPIWVPDGGIPDWKEVPLVAPS-ESLPERPGA 380
YPQRPG+ +C +YM+T CKFGE CKF HP + P V S P R GA
Sbjct: 417 YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGA 476
Query: 381 PDCPYFLKTQRCKFGLRCKFNHP 449
+CPY++KT CK+G CKF+HP
Sbjct: 477 LNCPYYMKTGTCKYGATCKFDHP 499
Score = 57 bits (135), Expect = 6e-009
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = +3
Query: 342 VAPSESLPERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
V +SLPERP P C +++KT +CKFGL CKF+HPK
Sbjct: 259 VETQDSLPERPSEPMCTFYMKTGKCKFGLSCKFHHPK 295
Score = 52 bits (122), Expect = 2e-007
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Frame = +3
Query: 117 HNPIGQMEAWYSTNPLAKRPRFENTSLPIYPQRPGEKDCVHYMQTRTCKFGEGCKFDHP 293
H+P ++ A T ++P + SL YP+R G +C +YM+T TCK+G CKFDHP
Sbjct: 444 HHPADRLSA--MTKQAPQQPNVK-LSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHP 499
Score = 52 bits (122), Expect = 2e-007
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +3
Query: 351 SESLPERPGAPDCPYFLKTQRCKFGLRCKFNHP 449
S + P+RPG +C Y++KT CKFG RCKF+HP
Sbjct: 414 SATYPQRPGQSECDYYMKTGECKFGERCKFHHP 446
>TAIR9_protein||AT3G02830.1 | Symbols: ZFN1 | ZFN1 (ZINC FINGER PROTEIN 1); DNA
binding / nuclease/ nucleic acid binding | chr3:614075-615916 FORWARD
Length = 398
Score = 86 bits (210), Expect = 1e-017
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 19/115 (16%)
Frame = +3
Query: 120 NPIGQMEAWYSTNPLAKRPRFENTSLPIYPQRPGEKDCVHYMQTRTCKFGEGCKFDHPIW 299
+P+ +A + N L+ E S YP+RPGE DC +Y++T C+FG C+F+HP
Sbjct: 13 SPLMNQDAMWQMN-LSSDETMETGS---YPERPGEPDCSYYIRTGLCRFGSTCRFNHP-- 66
Query: 300 VPDGGIPDWKEVPLVAPSESL----PERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
++ LV + + PER G P+C Y+LKT CKFG+ CKF+HP+
Sbjct: 67 ---------RDRELVIATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPR 112
Score = 51 bits (121), Expect = 2e-007
Identities = 20/36 (55%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = +3
Query: 348 PSESL-PERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
P E++ PERPG P+C +++KT CKFG CKF+HP+
Sbjct: 266 PRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPR 301
>TAIR9_protein||AT3G06410.1 | Symbols: | nucleic acid binding / zinc ion
binding | chr3:1947471-1949528 REVERSE
Length = 463
Score = 82 bits (201), Expect = 1e-016
Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Frame = +3
Query: 207 PQRPGEKDCVHYMQTRTCKFGEGCKFDHPIWVPDGGIPDWKEVPLVAPSESLPERPGAPD 386
P+R G C H+M+T TCKFG CK+ HP GG P+ P RPG +
Sbjct: 98 PERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGG----SVAPVSLSYLGYPLRPGEKE 153
Query: 387 CPYFLKTQRCKFGLRCKFNHP 449
C Y+L+T +CKFGL C+FNHP
Sbjct: 154 CSYYLRTGQCKFGLTCRFNHP 174
Score = 52 bits (124), Expect = 1e-007
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +3
Query: 354 ESLPERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
ES PERP PDC Y+L+T C +G RC+FNHP+
Sbjct: 49 ESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPR 81
Score = 52 bits (122), Expect = 2e-007
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +3
Query: 204 YPQRPGEKDCVHYMQTRTCKFGEGCKFDHPIWVPDGGIPDWKEVPLVAPSESL 362
YP RPGEK+C +Y++T CKFG C+F+HP+ + G P + P L
Sbjct: 145 YPLRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQL 197
>TAIR9_protein||AT5G16540.2 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA
binding / nuclease/ nucleic acid binding | chr5:5403437-5405034
FORWARD
Length = 369
Score = 82 bits (200), Expect = 2e-016
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 9/84 (10%)
Frame = +3
Query: 204 YPQRPGEKDCVHYMQTRTCKFGEGCKFDHPIWVPDGGIPDWKEVPLVAPSE-SLPERPGA 380
YP+R GE DC +Y++T C+FG C+F+HP D K V A + PER G
Sbjct: 39 YPERHGEPDCAYYIRTGLCRFGSTCRFNHP--------HDRKLVIATARIKGEYPERIGQ 90
Query: 381 PDCPYFLKTQRCKFGLRCKFNHPK 452
P+C ++LKT CKFG+ CKF+HP+
Sbjct: 91 PECEFYLKTGTCKFGVTCKFHHPR 114
Score = 52 bits (123), Expect = 1e-007
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +3
Query: 312 GIPDWKEVPL---VAPSESL-PERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
G VPL P E++ PERPG P+C +++KT CKFG CKF+HP+
Sbjct: 220 GFHSGNSVPLGFYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPR 270
>TAIR9_protein||AT5G16540.3 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA
binding / nuclease/ nucleic acid binding | chr5:5403598-5405034
FORWARD
Length = 355
Score = 82 bits (200), Expect = 2e-016
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 9/84 (10%)
Frame = +3
Query: 204 YPQRPGEKDCVHYMQTRTCKFGEGCKFDHPIWVPDGGIPDWKEVPLVAPSE-SLPERPGA 380
YP+R GE DC +Y++T C+FG C+F+HP D K V A + PER G
Sbjct: 18 YPERHGEPDCAYYIRTGLCRFGSTCRFNHP--------HDRKLVIATARIKGEYPERIGQ 69
Query: 381 PDCPYFLKTQRCKFGLRCKFNHPK 452
P+C ++LKT CKFG+ CKF+HP+
Sbjct: 70 PECEFYLKTGTCKFGVTCKFHHPR 93
Score = 52 bits (123), Expect = 1e-007
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +3
Query: 312 GIPDWKEVPL---VAPSESL-PERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
G VPL P E++ PERPG P+C +++KT CKFG CKF+HP+
Sbjct: 199 GFHSGNSVPLGFYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPR 249
>TAIR9_protein||AT5G16540.1 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA
binding / nuclease/ nucleic acid binding | chr5:5403437-5405034
FORWARD
Length = 376
Score = 82 bits (200), Expect = 2e-016
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 9/84 (10%)
Frame = +3
Query: 204 YPQRPGEKDCVHYMQTRTCKFGEGCKFDHPIWVPDGGIPDWKEVPLVAPSE-SLPERPGA 380
YP+R GE DC +Y++T C+FG C+F+HP D K V A + PER G
Sbjct: 39 YPERHGEPDCAYYIRTGLCRFGSTCRFNHP--------HDRKLVIATARIKGEYPERIGQ 90
Query: 381 PDCPYFLKTQRCKFGLRCKFNHPK 452
P+C ++LKT CKFG+ CKF+HP+
Sbjct: 91 PECEFYLKTGTCKFGVTCKFHHPR 114
Score = 52 bits (123), Expect = 1e-007
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +3
Query: 312 GIPDWKEVPL---VAPSESL-PERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
G VPL P E++ PERPG P+C +++KT CKFG CKF+HP+
Sbjct: 220 GFHSGNSVPLGFYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPR 270
>TAIR9_protein||AT3G48440.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr3:17941402-17943576 FORWARD
Length = 449
Score = 76 bits (185), Expect = 9e-015
Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = +3
Query: 183 ENTSLPIYPQRPGEKDCVHYMQTRTCKFGEGCKFDHPIWVPDGGIPDWKEVPLVAPSESL 362
EN S +YP RPG +DC YM+T +CKFG CKF+HP+ D K V E
Sbjct: 100 ENESENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNK----VREKEDD 155
Query: 363 PERPGAPDCPYFLKTQRCKFGLRCKFNH 446
+ G DC Y+ +T CK+G C+FNH
Sbjct: 156 GGKLGLIDCKYYFRTGGCKYGETCRFNH 183
Score = 53 bits (126), Expect = 6e-008
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +3
Query: 348 PSESLPERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
P+E PERP P+C Y++KT CKF CK++HPK
Sbjct: 339 PAEEFPERPDQPECSYYMKTGDCKFKFNCKYHHPK 373
>TAIR9_protein||AT2G47850.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr2:19595953-19598119 FORWARD
Length = 469
Score = 74 bits (180), Expect = 3e-014
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Frame = +3
Query: 204 YPQRPGEKDCVHYMQTRTCKFGEGCKFDHPIWVPDGGIPDWKEVPLVAPSESLPERPGAP 383
+P+RPGE +C +Y++T CKFG CKF H P +P V LP RPG
Sbjct: 286 FPERPGEPECQYYLKTGDCKFGTSCKFHH----PRDRVP--PRANCVLSPIGLPLRPGVQ 339
Query: 384 DCPYFLKTQRCKFGLRCKFNHP 449
C ++++ CKFG CKF+HP
Sbjct: 340 RCTFYVQNGFCKFGSTCKFDHP 361
Score = 58 bits (138), Expect = 3e-009
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 8/59 (13%)
Frame = +3
Query: 291 PIWVP---DGGIPD--WKEVPLVAPSESLPERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
P W P D G+ + W+ L S+S PERPGAPDC Y+++T C +G RC++NHP+
Sbjct: 17 PDWTPADADTGLQESMWR---LGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPR 72
Score = 56 bits (133), Expect = 1e-008
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3
Query: 339 LVAPSESLPERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
++ ++ PERPG P+C Y+LKT CKFG CKF+HP+
Sbjct: 279 VIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHPR 316
>TAIR9_protein||AT2G47850.2 | Symbols: | zinc finger (CCCH-type) family protein
| chr2:19595953-19598119 FORWARD
Length = 443
Score = 74 bits (180), Expect = 3e-014
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Frame = +3
Query: 204 YPQRPGEKDCVHYMQTRTCKFGEGCKFDHPIWVPDGGIPDWKEVPLVAPSESLPERPGAP 383
+P+RPGE +C +Y++T CKFG CKF H P +P V LP RPG
Sbjct: 260 FPERPGEPECQYYLKTGDCKFGTSCKFHH----PRDRVP--PRANCVLSPIGLPLRPGVQ 313
Query: 384 DCPYFLKTQRCKFGLRCKFNHP 449
C ++++ CKFG CKF+HP
Sbjct: 314 RCTFYVQNGFCKFGSTCKFDHP 335
Score = 58 bits (138), Expect = 3e-009
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 8/59 (13%)
Frame = +3
Query: 291 PIWVP---DGGIPD--WKEVPLVAPSESLPERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
P W P D G+ + W+ L S+S PERPGAPDC Y+++T C +G RC++NHP+
Sbjct: 17 PDWTPADADTGLQESMWR---LGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPR 72
Score = 56 bits (133), Expect = 1e-008
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3
Query: 339 LVAPSESLPERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
++ ++ PERPG P+C Y+LKT CKFG CKF+HP+
Sbjct: 253 VIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHPR 290
>TAIR9_protein||AT2G47850.3 | Symbols: | zinc finger (CCCH-type) family protein
| chr2:19595953-19598119 FORWARD
Length = 469
Score = 74 bits (180), Expect = 3e-014
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Frame = +3
Query: 204 YPQRPGEKDCVHYMQTRTCKFGEGCKFDHPIWVPDGGIPDWKEVPLVAPSESLPERPGAP 383
+P+RPGE +C +Y++T CKFG CKF H P +P V LP RPG
Sbjct: 286 FPERPGEPECQYYLKTGDCKFGTSCKFHH----PRDRVP--PRANCVLSPIGLPLRPGVQ 339
Query: 384 DCPYFLKTQRCKFGLRCKFNHP 449
C ++++ CKFG CKF+HP
Sbjct: 340 RCTFYVQNGFCKFGSTCKFDHP 361
Score = 58 bits (138), Expect = 3e-009
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 8/59 (13%)
Frame = +3
Query: 291 PIWVP---DGGIPD--WKEVPLVAPSESLPERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
P W P D G+ + W+ L S+S PERPGAPDC Y+++T C +G RC++NHP+
Sbjct: 17 PDWTPADADTGLQESMWR---LGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPR 72
Score = 56 bits (133), Expect = 1e-008
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3
Query: 339 LVAPSESLPERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
++ ++ PERPG P+C Y+LKT CKFG CKF+HP+
Sbjct: 279 VIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHPR 316
>TAIR9_protein||AT1G04990.2 | Symbols: | zinc finger (CCCH-type) family protein
| chr1:1419368-1421454 REVERSE
Length = 405
Score = 55 bits (130), Expect = 2e-008
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +3
Query: 354 ESLPERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
E LPER G PDC YFLKT CK+G CK++HPK
Sbjct: 85 EELPERIGQPDCEYFLKTGACKYGPTCKYHHPK 117
>TAIR9_protein||AT1G04990.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr1:1419368-1421454 REVERSE
Length = 405
Score = 55 bits (130), Expect = 2e-008
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +3
Query: 354 ESLPERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
E LPER G PDC YFLKT CK+G CK++HPK
Sbjct: 85 EELPERIGQPDCEYFLKTGACKYGPTCKYHHPK 117
>TAIR9_protein||AT5G18550.1 | Symbols: | nucleic acid binding / zinc ion
binding | chr5:6160515-6162729 FORWARD
Length = 466
Score = 52 bits (122), Expect = 2e-007
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +3
Query: 354 ESLPERPGAPDCPYFLKTQRCKFGLRCKFNHPK 452
E+ PERP PDC Y+L+T C +G RC+FNHP+
Sbjct: 46 ETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPR 78
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,927,766,881
Number of Sequences: 33410
Number of Extensions: 1927766881
Number of Successful Extensions: 103031243
Number of sequences better than 0.0: 0
|