BLASTX 7.6.2
Query= RU08744 /QuerySize=469
(468 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G04080.2 | Symbols: PRP39 | PRP39; binding | c... 116 6e-027
TAIR9_protein||AT1G04080.1 | Symbols: PRP39 | PRP39; binding | c... 114 3e-026
TAIR9_protein||AT5G46400.1 | Symbols: AT PRP39-2, PRP39-2 | PRP3... 70 4e-013
>TAIR9_protein||AT1G04080.2 | Symbols: PRP39 | PRP39; binding |
chr1:1053171-1056550 FORWARD
Length = 583
Score = 116 bits (290), Expect = 6e-027
Identities = 60/117 (51%), Positives = 75/117 (64%), Gaps = 7/117 (5%)
Frame = -3
Query: 373 GRLFERGLAYVGTDYLSFPLWDRYIDYEFMQQAWGQLVVIYSRILENPNQQLDRYLNSFK 194
GRLFER L YVGTD+LS PLWD+YI+YE+MQQ W ++ +IY+RILENP Q LDRY +SFK
Sbjct: 5 GRLFERALVYVGTDFLSSPLWDKYIEYEYMQQDWSRVALIYTRILENPIQNLDRYFSSFK 64
Query: 193 ELAGSRPLSELRXXXXXXXXX------XXXXXXXXDGVQANGEDAQPDGA-EPSPAI 44
ELA +RPLSELR G +A+ +Q DG+ E SP +
Sbjct: 65 ELAETRPLSELRSAEESAAAAVAVAGDASESAASESGEKADEGRSQVDGSTEQSPKL 121
>TAIR9_protein||AT1G04080.1 | Symbols: PRP39 | PRP39; binding |
chr1:1051803-1056550 FORWARD
Length = 769
Score = 114 bits (284), Expect = 3e-026
Identities = 59/116 (50%), Positives = 74/116 (63%), Gaps = 7/116 (6%)
Frame = -3
Query: 370 RLFERGLAYVGTDYLSFPLWDRYIDYEFMQQAWGQLVVIYSRILENPNQQLDRYLNSFKE 191
RLFER L YVGTD+LS PLWD+YI+YE+MQQ W ++ +IY+RILENP Q LDRY +SFKE
Sbjct: 192 RLFERALVYVGTDFLSSPLWDKYIEYEYMQQDWSRVALIYTRILENPIQNLDRYFSSFKE 251
Query: 190 LAGSRPLSELRXXXXXXXXX------XXXXXXXXDGVQANGEDAQPDGA-EPSPAI 44
LA +RPLSELR G +A+ +Q DG+ E SP +
Sbjct: 252 LAETRPLSELRSAEESAAAAVAVAGDASESAASESGEKADEGRSQVDGSTEQSPKL 307
>TAIR9_protein||AT5G46400.1 | Symbols: AT PRP39-2, PRP39-2 | PRP39-2 |
chr5:18820032-18824522 FORWARD
Length = 1037
Score = 70 bits (171), Expect = 4e-013
Identities = 30/64 (46%), Positives = 44/64 (68%)
Frame = -3
Query: 370 RLFERGLAYVGTDYLSFPLWDRYIDYEFMQQAWGQLVVIYSRILENPNQQLDRYLNSFKE 191
RLFERGL+++G DY LWD+YI+Y QQ W L +Y R L+ P+++LD Y +F++
Sbjct: 138 RLFERGLSFIGKDYSCCTLWDKYIEYLLGQQQWSSLANVYLRTLKYPSKKLDLYYKNFRK 197
Query: 190 LAGS 179
+A S
Sbjct: 198 IAAS 201
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,989,584,844
Number of Sequences: 33410
Number of Extensions: 1989584844
Number of Successful Extensions: 108668354
Number of sequences better than 0.0: 0
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