BLASTX 7.6.2
Query= RU08759 /QuerySize=822
(821 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G25970.1 | Symbols: | KH domain-containing pr... 147 9e-036
TAIR9_protein||AT4G10070.1 | Symbols: | KH domain-containing pr... 108 5e-024
TAIR9_protein||AT1G33680.1 | Symbols: | RNA binding / nucleic a... 103 2e-022
>TAIR9_protein||AT2G25970.1 | Symbols: | KH domain-containing protein |
chr2:11071844-11075604 REVERSE
Length = 633
Score = 147 bits (370), Expect = 9e-036
Identities = 76/125 (60%), Positives = 94/125 (75%), Gaps = 2/125 (1%)
Frame = +1
Query: 451 DSEADLNSLTRDVELTGTSGQISRAEQLINDVIAEADAGGSAPSTNQGFNSM--PPGGEQ 624
D +AD N TR V+LTGT QIS+AEQLI DV+ EA+AG +A S G M G +Q
Sbjct: 172 DMDADPNCATRTVDLTGTPDQISKAEQLITDVLQEAEAGNTAGSGGGGGRRMGGQAGADQ 231
Query: 625 FVMKVPNNKVALIIGKGGETIRNMQTKSGARIQIVPLHLPPGDMSTERSVYINGGAEQFE 804
FVMK+PNNKV LIIGKGGETI++MQ K+GARIQ++PLHLPPGD + ER++ I+G EQ E
Sbjct: 232 FVMKIPNNKVGLIIGKGGETIKSMQAKTGARIQVIPLHLPPGDPTPERTLQIDGITEQIE 291
Query: 805 AAKEL 819
AK+L
Sbjct: 292 HAKQL 296
Score = 60 bits (143), Expect = 2e-009
Identities = 32/41 (78%), Positives = 35/41 (85%), Gaps = 2/41 (4%)
Frame = +2
Query: 323 SYGS--GISKKIDIPNGKVGVIIGKQGETIRQLQLQSGAKI 439
SYGS G +KKIDIPN +VGVIIGK GETI+ LQLQSGAKI
Sbjct: 127 SYGSFQGTTKKIDIPNMRVGVIIGKGGETIKYLQLQSGAKI 167
>TAIR9_protein||AT4G10070.1 | Symbols: | KH domain-containing protein |
chr4:6295608-6299759 REVERSE
Length = 726
Score = 108 bits (269), Expect = 5e-024
Identities = 64/125 (51%), Positives = 83/125 (66%), Gaps = 3/125 (2%)
Frame = +1
Query: 451 DSEADLNSLTRDVELTGTSGQISRAEQLINDVIAEADAGGSAPSTNQGFNSMPPGG--EQ 624
DSEAD +S R VE+ G+ I AE+LI+ VIAEA+AGGS +G S G EQ
Sbjct: 214 DSEADPSSALRPVEIIGSVACIESAEKLISAVIAEAEAGGSPALVARGHPSTHAIGIPEQ 273
Query: 625 FVMKVPNNKVALIIGKGGETIRNMQTKSGARIQIVPLHLPPGDMSTERSVYINGGAEQFE 804
+KVPN+KV LIIG+GGETI+NMQT+SGAR Q++P H GD ER+V I+G Q +
Sbjct: 274 IEIKVPNDKVGLIIGRGGETIKNMQTRSGARTQLIPQH-AEGDGLKERTVRISGDKMQID 332
Query: 805 AAKEL 819
A ++
Sbjct: 333 IATDM 337
Score = 49 bits (116), Expect = 3e-006
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = +2
Query: 341 SKKIDIPNGKVGVIIGKQGETIRQLQLQSGAKI 439
+++ID+P+ KVGV+IGK GETIR LQ SGAKI
Sbjct: 177 TRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKI 209
>TAIR9_protein||AT1G33680.1 | Symbols: | RNA binding / nucleic acid binding |
chr1:12204056-12208282 FORWARD
Length = 764
Score = 103 bits (256), Expect = 2e-022
Identities = 61/123 (49%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Frame = +1
Query: 451 DSEADLNSLTRDVELTGTSGQISRAEQLINDVIAEADAGGSAPSTNQGFNSMPPGGEQFV 630
D+EAD +S R VE+ GT I +AE+LIN VIAE +AGG +G EQ
Sbjct: 270 DAEADPSSALRPVEIIGTVSCIEKAEKLINAVIAEVEAGGVPALAARGV------PEQME 323
Query: 631 MKVPNNKVALIIGKGGETIRNMQTKSGARIQIVPLHLPPGDMSTERSVYINGGAEQFEAA 810
+KVP++KV +IIG+GGETI+NMQTKS ARIQ++P + GD S ER+V I+G Q + A
Sbjct: 324 IKVPSDKVGVIIGRGGETIKNMQTKSRARIQLIPQN--EGDASKERTVRISGDKRQIDIA 381
Query: 811 KEL 819
L
Sbjct: 382 TAL 384
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,989,584,844
Number of Sequences: 33410
Number of Extensions: 1989584844
Number of Successful Extensions: 108668354
Number of sequences better than 0.0: 0
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