BLASTX 7.6.2
Query= RU09035 /QuerySize=465
(464 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G18990.1 | Symbols: VRN1, REM39 | VRN1 (REDUCE... 75 2e-014
TAIR9_protein||AT1G49480.1 | Symbols: RTV1 | RTV1 (related to ve... 73 8e-014
TAIR9_protein||AT4G33280.1 | Symbols: | DNA binding / transcrip... 48 2e-006
>TAIR9_protein||AT3G18990.1 | Symbols: VRN1, REM39 | VRN1 (REDUCED VERNALIZATION
RESPONSE 1); transcription repressor | chr3:6549077-6551568 REVERSE
Length = 342
Score = 75 bits (182), Expect = 2e-014
Identities = 38/109 (34%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Frame = -3
Query: 399 ALEAANRYSSNHPCFRTLLTETYVTKG-ILHIPCTFVKDYIKIKKRTAELQVSNRLWSVK 223
A+ AA + +P FR +L +Y+ +G I+++P F + Y+ ++Q++ + W V+
Sbjct: 230 AINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAEKQWPVR 289
Query: 222 WINDSRSSRFSQGWNEFVRQNDLKVGDVCVFELIKQANDVVMMKVSFFR 76
+ + ++FSQGW EF +N+L GDVCVFEL++ + V +KV+ FR
Sbjct: 290 CLYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFV--LKVTAFR 336
>TAIR9_protein||AT1G49480.1 | Symbols: RTV1 | RTV1 (related to vernalization1
1); DNA binding / transcription factor | chr1:18314596-18315460
REVERSE
Length = 227
Score = 73 bits (177), Expect = 8e-014
Identities = 37/109 (33%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Frame = -3
Query: 399 ALEAANRYSSNHPCFRTLLTETYVTKG-ILHIPCTFVKDYIKIKKRTAELQVSNRLWSVK 223
A+ AA + +P FR +L +Y+ +G I+++P F + Y+ +LQ+ + W V+
Sbjct: 115 AVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGEKQWPVR 174
Query: 222 WINDSRSSRFSQGWNEFVRQNDLKVGDVCVFELIKQANDVVMMKVSFFR 76
+ + ++FSQGW EF +N++ GDVCVFEL++ + V ++V+ FR
Sbjct: 175 CLYKAGRAKFSQGWYEFTLENNIGEGDVCVFELLRTRDFV--LEVTAFR 221
>TAIR9_protein||AT4G33280.1 | Symbols: | DNA binding / transcription factor |
chr4:16047357-16049310 REVERSE
Length = 338
Score = 48 bits (113), Expect = 2e-006
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = -3
Query: 330 VTKGILHIPCTFVKDYIKIKKRTAELQVSNRLWSVKW--INDSRSSRFSQGWNEFVRQND 157
V+K L IP + + I ++ +QV W +K+ S S GW +FV+ N+
Sbjct: 233 VSKCFLTIPYKWCVKNMLITRQEVVMQVDQTKWEMKFNIFGARGSGGISTGWKKFVQDNN 292
Query: 156 LKVGDVCVFELIKQANDVVMMKVSFFR 76
L+ GDVCVFE + + V FR
Sbjct: 293 LREGDVCVFEPANSETKPLHLNVYIFR 319
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,018,912,189
Number of Sequences: 33410
Number of Extensions: 2018912189
Number of Successful Extensions: 108904459
Number of sequences better than 0.0: 0
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