BLASTX 7.6.2
Query= RU09265 /QuerySize=292
(291 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G63260.1 | Symbols: | zinc finger (CCCH-type)... 137 2e-033
TAIR9_protein||AT3G48440.1 | Symbols: | zinc finger (CCCH-type)... 136 4e-033
TAIR9_protein||AT3G02830.1 | Symbols: ZFN1 | ZFN1 (ZINC FINGER P... 95 8e-021
TAIR9_protein||AT1G04990.2 | Symbols: | zinc finger (CCCH-type)... 93 3e-020
TAIR9_protein||AT1G04990.1 | Symbols: | zinc finger (CCCH-type)... 93 3e-020
TAIR9_protein||AT3G06410.1 | Symbols: | nucleic acid binding / ... 93 3e-020
TAIR9_protein||AT2G32930.1 | Symbols: ZFN2 | ZFN2 (ZINC FINGER N... 82 5e-017
TAIR9_protein||AT5G16540.2 | Symbols: ZFN3 | ZFN3 (ZINC FINGER N... 81 9e-017
TAIR9_protein||AT5G16540.3 | Symbols: ZFN3 | ZFN3 (ZINC FINGER N... 81 9e-017
TAIR9_protein||AT5G16540.1 | Symbols: ZFN3 | ZFN3 (ZINC FINGER N... 81 9e-017
TAIR9_protein||AT2G47850.1 | Symbols: | zinc finger (CCCH-type)... 75 9e-015
TAIR9_protein||AT2G47850.2 | Symbols: | zinc finger (CCCH-type)... 75 9e-015
TAIR9_protein||AT1G48195.1 | Symbols: | zinc finger (CCCH-type)... 74 2e-014
TAIR9_protein||AT3G12680.1 | Symbols: HUA1 | HUA1 (ENHANCER OF A... 69 5e-013
TAIR9_protein||AT1G29570.1 | Symbols: | zinc finger protein-rel... 50 2e-007
TAIR9_protein||AT2G47850.3 | Symbols: | zinc finger (CCCH-type)... 47 2e-006
>TAIR9_protein||AT5G63260.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr5:25361900-25364453 FORWARD
Length = 436
Score = 137 bits (343), Expect = 2e-033
Identities = 61/96 (63%), Positives = 70/96 (72%)
Frame = +1
Query: 1 PSQTECKYYLRPGGCKYGEACRYNHGKGKPLVAPVVELNFLGLPIRQGERECPYYMRNGS 180
P ECKYY R GGCKYGE+CR++H K A V ELNFLGLPIR GE+ECP+YMRNGS
Sbjct: 149 PKLMECKYYFRTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRPGEKECPFYMRNGS 208
Query: 181 CKYGSNCRFNHPDPTAAGGSDPPSGFDNGGPALITK 288
CK+GS+C+FNHPDPTA GG D P N G + K
Sbjct: 209 CKFGSDCKFNHPDPTAIGGVDSPLYRGNNGGSFSPK 244
Score = 52 bits (123), Expect = 6e-008
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +1
Query: 130 PIRQGERECPYYMRNGSCKYGSNCRFNHP 216
P+R +C +YMR GSCKYGS+C+FNHP
Sbjct: 99 PVRPDSEDCSFYMRTGSCKYGSSCKFNHP 127
>TAIR9_protein||AT3G48440.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr3:17941402-17943576 FORWARD
Length = 449
Score = 136 bits (340), Expect = 4e-033
Identities = 59/91 (64%), Positives = 68/91 (74%)
Frame = +1
Query: 13 ECKYYLRPGGCKYGEACRYNHGKGKPLVAPVVELNFLGLPIRQGERECPYYMRNGSCKYG 192
+CKYY R GGCKYGE CR+NH K +A ELNFLGLP+R GE ECPYYMRNGSCKYG
Sbjct: 163 DCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYG 222
Query: 193 SNCRFNHPDPTAAGGSDPPSGFDNGGPALIT 285
+ C+FNHPDPT GG+D PS N G ++ T
Sbjct: 223 AECKFNHPDPTTIGGTDSPSFRGNNGVSIGT 253
Score = 53 bits (125), Expect = 3e-008
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +1
Query: 130 PIRQGERECPYYMRNGSCKYGSNCRFNHP 216
P+R G +C +YMR GSCK+GS+C+FNHP
Sbjct: 108 PVRPGAEDCSFYMRTGSCKFGSSCKFNHP 136
>TAIR9_protein||AT3G02830.1 | Symbols: ZFN1 | ZFN1 (ZINC FINGER PROTEIN 1); DNA
binding / nuclease/ nucleic acid binding | chr3:614075-615916 FORWARD
Length = 398
Score = 95 bits (234), Expect = 8e-021
Identities = 38/83 (45%), Positives = 52/83 (62%)
Frame = +1
Query: 7 QTECKYYLRPGGCKYGEACRYNHGKGKPLVAPVVELNFLGLPIRQGERECPYYMRNGSCK 186
Q EC+YYL+ G CK+G C+++H + K +A V LN LG P+R E +C Y++R G CK
Sbjct: 88 QPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCK 147
Query: 187 YGSNCRFNHPDPTAAGGSDPPSG 255
+G C+FNHP P P SG
Sbjct: 148 FGGTCKFNHPQPQPTNMMVPTSG 170
Score = 49 bits (116), Expect = 4e-007
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +1
Query: 130 PIRQGERECPYYMRNGSCKYGSNCRFNHP 216
P R GE +C YY+R G C++GS CRFNHP
Sbjct: 38 PERPGEPDCSYYIRTGLCRFGSTCRFNHP 66
>TAIR9_protein||AT1G04990.2 | Symbols: | zinc finger (CCCH-type) family protein
| chr1:1419368-1421454 REVERSE
Length = 405
Score = 93 bits (229), Expect = 3e-020
Identities = 40/87 (45%), Positives = 58/87 (66%), Gaps = 6/87 (6%)
Frame = +1
Query: 7 QTECKYYLRPGGCKYGEACRYNHGKGKPLVAPVVELNFLGLPIRQGERECPYYMRNGSCK 186
Q +C+Y+L+ G CKYG C+Y+H K + PV+ N +GLP+R GE+ CPYY+R G+C+
Sbjct: 93 QPDCEYFLKTGACKYGPTCKYHHPKDRNGAQPVM-FNVIGLPMRLGEKPCPYYLRTGTCR 151
Query: 187 YGSNCRFNHPDP-----TAAGGSDPPS 252
+G C+F+HP P TA G S P+
Sbjct: 152 FGVACKFHHPQPDNGHSTAYGMSSFPA 178
Score = 72 bits (175), Expect = 6e-014
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Frame = +1
Query: 1 PSQTECKYYLRPGGCKYGEACRYNHGKGKPL-VAPVVELNFLGLPIRQGERECPYYMRNG 177
P + +C++YLR G C YG +CRYNH P VA E LP R G+ +C Y+++ G
Sbjct: 48 PGERDCQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKE----ELPERIGQPDCEYFLKTG 103
Query: 178 SCKYGSNCRFNHP 216
+CKYG C+++HP
Sbjct: 104 ACKYGPTCKYHHP 116
>TAIR9_protein||AT1G04990.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr1:1419368-1421454 REVERSE
Length = 405
Score = 93 bits (229), Expect = 3e-020
Identities = 40/87 (45%), Positives = 58/87 (66%), Gaps = 6/87 (6%)
Frame = +1
Query: 7 QTECKYYLRPGGCKYGEACRYNHGKGKPLVAPVVELNFLGLPIRQGERECPYYMRNGSCK 186
Q +C+Y+L+ G CKYG C+Y+H K + PV+ N +GLP+R GE+ CPYY+R G+C+
Sbjct: 93 QPDCEYFLKTGACKYGPTCKYHHPKDRNGAQPVM-FNVIGLPMRLGEKPCPYYLRTGTCR 151
Query: 187 YGSNCRFNHPDP-----TAAGGSDPPS 252
+G C+F+HP P TA G S P+
Sbjct: 152 FGVACKFHHPQPDNGHSTAYGMSSFPA 178
Score = 72 bits (175), Expect = 6e-014
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Frame = +1
Query: 1 PSQTECKYYLRPGGCKYGEACRYNHGKGKPL-VAPVVELNFLGLPIRQGERECPYYMRNG 177
P + +C++YLR G C YG +CRYNH P VA E LP R G+ +C Y+++ G
Sbjct: 48 PGERDCQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKE----ELPERIGQPDCEYFLKTG 103
Query: 178 SCKYGSNCRFNHP 216
+CKYG C+++HP
Sbjct: 104 ACKYGPTCKYHHP 116
>TAIR9_protein||AT3G06410.1 | Symbols: | nucleic acid binding / zinc ion
binding | chr3:1947471-1949528 REVERSE
Length = 463
Score = 93 bits (229), Expect = 3e-020
Identities = 42/81 (51%), Positives = 56/81 (69%), Gaps = 6/81 (7%)
Frame = +1
Query: 16 CKYYLRPGGCKYGEACRYNH---GKGKPLVAPVVELNFLGLPIRQGERECPYYMRNGSCK 186
C++++R G CK+G +C+Y+H G G VAP V L++LG P+R GE+EC YY+R G CK
Sbjct: 106 CQHFMRTGTCKFGASCKYHHPRQGGGGGSVAP-VSLSYLGYPLRPGEKECSYYLRTGQCK 164
Query: 187 YGSNCRFNHPDPTAAGGSDPP 249
+G CRFNHP P A G PP
Sbjct: 165 FGLTCRFNHPVPLAVQG--PP 183
Score = 46 bits (108), Expect = 3e-006
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = +1
Query: 130 PIRQGERECPYYMRNGSCKYGSNCRFNHP 216
P R E +C YY+R G C YGS CRFNHP
Sbjct: 52 PERPDEPDCIYYLRTGVCGYGSRCRFNHP 80
>TAIR9_protein||AT2G32930.1 | Symbols: ZFN2 | ZFN2 (ZINC FINGER NUCLEASE 2); DNA
binding / nuclease/ nucleic acid binding | chr2:13965990-13968419
REVERSE
Length = 454
Score = 82 bits (201), Expect = 5e-017
Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = +1
Query: 37 GGCKYGEACRYNHGKGKPLVAPVVELNFLGLPIRQGERECPYYMRNGSCKYGSNCRFNHP 216
G CKYG C+Y+H K + PV+ N LGLP+RQGE+ CPYYM+ G C++G C+F+HP
Sbjct: 97 GACKYGPTCKYHHPKDRNGAGPVL-FNVLGLPMRQGEKPCPYYMQTGLCRFGVACKFHHP 155
Query: 217 DP 222
P
Sbjct: 156 HP 157
Score = 72 bits (175), Expect = 6e-014
Identities = 28/69 (40%), Positives = 45/69 (65%)
Frame = +1
Query: 7 QTECKYYLRPGGCKYGEACRYNHGKGKPLVAPVVELNFLGLPIRQGERECPYYMRNGSCK 186
+ EC++++ G CKYG+ C+Y+H K + L +P LN + LP R G+ C + G CK
Sbjct: 264 RAECRFFMNTGTCKYGDDCKYSHPKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCK 323
Query: 187 YGSNCRFNH 213
+G+NC+F+H
Sbjct: 324 FGANCKFDH 332
>TAIR9_protein||AT5G16540.2 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA
binding / nuclease/ nucleic acid binding | chr5:5403437-5405034
FORWARD
Length = 369
Score = 81 bits (199), Expect = 9e-017
Identities = 30/70 (42%), Positives = 46/70 (65%)
Frame = +1
Query: 7 QTECKYYLRPGGCKYGEACRYNHGKGKPLVAPVVELNFLGLPIRQGERECPYYMRNGSCK 186
Q EC++YL+ G CK+G C+++H + K + V +N L P+R E +C Y++R G CK
Sbjct: 90 QPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCK 149
Query: 187 YGSNCRFNHP 216
+G C+FNHP
Sbjct: 150 FGGTCKFNHP 159
Score = 50 bits (117), Expect = 3e-007
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +1
Query: 130 PIRQGERECPYYMRNGSCKYGSNCRFNHP 216
P R GE +C YY+R G C++GS CRFNHP
Sbjct: 40 PERHGEPDCAYYIRTGLCRFGSTCRFNHP 68
>TAIR9_protein||AT5G16540.3 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA
binding / nuclease/ nucleic acid binding | chr5:5403598-5405034
FORWARD
Length = 355
Score = 81 bits (199), Expect = 9e-017
Identities = 30/70 (42%), Positives = 46/70 (65%)
Frame = +1
Query: 7 QTECKYYLRPGGCKYGEACRYNHGKGKPLVAPVVELNFLGLPIRQGERECPYYMRNGSCK 186
Q EC++YL+ G CK+G C+++H + K + V +N L P+R E +C Y++R G CK
Sbjct: 69 QPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCK 128
Query: 187 YGSNCRFNHP 216
+G C+FNHP
Sbjct: 129 FGGTCKFNHP 138
Score = 50 bits (117), Expect = 3e-007
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +1
Query: 130 PIRQGERECPYYMRNGSCKYGSNCRFNHP 216
P R GE +C YY+R G C++GS CRFNHP
Sbjct: 19 PERHGEPDCAYYIRTGLCRFGSTCRFNHP 47
>TAIR9_protein||AT5G16540.1 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA
binding / nuclease/ nucleic acid binding | chr5:5403437-5405034
FORWARD
Length = 376
Score = 81 bits (199), Expect = 9e-017
Identities = 30/70 (42%), Positives = 46/70 (65%)
Frame = +1
Query: 7 QTECKYYLRPGGCKYGEACRYNHGKGKPLVAPVVELNFLGLPIRQGERECPYYMRNGSCK 186
Q EC++YL+ G CK+G C+++H + K + V +N L P+R E +C Y++R G CK
Sbjct: 90 QPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCK 149
Query: 187 YGSNCRFNHP 216
+G C+FNHP
Sbjct: 150 FGGTCKFNHP 159
Score = 50 bits (117), Expect = 3e-007
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +1
Query: 130 PIRQGERECPYYMRNGSCKYGSNCRFNHP 216
P R GE +C YY+R G C++GS CRFNHP
Sbjct: 40 PERHGEPDCAYYIRTGLCRFGSTCRFNHP 68
>TAIR9_protein||AT2G47850.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr2:19595953-19598119 FORWARD
Length = 469
Score = 75 bits (182), Expect = 9e-015
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Frame = +1
Query: 1 PSQTECKYYLRPGGCKYGEACRYNHGKGKPLVAPVVELNFLGLPIRQGERECPYYMRNGS 180
P +C YY+R G C YG CRYNH + + V V P R GE C +Y++ G+
Sbjct: 46 PGAPDCAYYMRTGVCGYGNRCRYNHPRDRASVEATVRATG-QYPERFGEPPCQFYLKTGT 104
Query: 181 CKYGSNCRFNHPDPTAAGGS 240
CK+G++C+F+H P AGGS
Sbjct: 105 CKFGASCKFHH--PKNAGGS 122
Score = 47 bits (109), Expect = 2e-006
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +1
Query: 130 PIRQGERECPYYMRNGSCKYGSNCRFNHPDPTAA 231
P R G +C YYMR G C YG+ CR+NHP A+
Sbjct: 43 PERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRAS 76
>TAIR9_protein||AT2G47850.2 | Symbols: | zinc finger (CCCH-type) family protein
| chr2:19595953-19598119 FORWARD
Length = 443
Score = 75 bits (182), Expect = 9e-015
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Frame = +1
Query: 1 PSQTECKYYLRPGGCKYGEACRYNHGKGKPLVAPVVELNFLGLPIRQGERECPYYMRNGS 180
P +C YY+R G C YG CRYNH + + V V P R GE C +Y++ G+
Sbjct: 46 PGAPDCAYYMRTGVCGYGNRCRYNHPRDRASVEATVRATG-QYPERFGEPPCQFYLKTGT 104
Query: 181 CKYGSNCRFNHPDPTAAGGS 240
CK+G++C+F+H P AGGS
Sbjct: 105 CKFGASCKFHH--PKNAGGS 122
Score = 47 bits (109), Expect = 2e-006
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +1
Query: 130 PIRQGERECPYYMRNGSCKYGSNCRFNHPDPTAA 231
P R G +C YYMR G C YG+ CR+NHP A+
Sbjct: 43 PERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRAS 76
>TAIR9_protein||AT1G48195.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr1:17796349-17796597 FORWARD
Length = 83
Score = 74 bits (179), Expect = 2e-014
Identities = 31/71 (43%), Positives = 41/71 (57%)
Frame = +1
Query: 1 PSQTECKYYLRPGGCKYGEACRYNHGKGKPLVAPVVELNFLGLPIRQGERECPYYMRNGS 180
P + EC YYLR G C + C+Y+H K P LN GLP+R G+ CP+Y R G
Sbjct: 10 PGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPHYSRFGI 69
Query: 181 CKYGSNCRFNH 213
C+ G C+F+H
Sbjct: 70 CRSGPTCKFDH 80
>TAIR9_protein||AT3G12680.1 | Symbols: HUA1 | HUA1 (ENHANCER OF AG-4 1); RNA
binding | chr3:4025276-4028999 REVERSE
Length = 525
Score = 69 bits (167), Expect = 5e-013
Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 9/79 (11%)
Frame = +1
Query: 16 CKYYLRPGGCKYGEACRYNHGKGKP-------LVAPVVELNFLGLPIRQGERECPYYMRN 174
C +Y++ CK+GE+CR++H P APVV P R GE +CPYY++
Sbjct: 180 CTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNE--EYPERPGEPDCPYYIKT 237
Query: 175 GSCKYGSNCRFNHPDPTAA 231
CKYGS C+FNHP AA
Sbjct: 238 QRCKYGSKCKFNHPREEAA 256
Score = 64 bits (155), Expect = 1e-011
Identities = 24/43 (55%), Positives = 33/43 (76%)
Frame = +1
Query: 100 PVVELNFLGLPIRQGERECPYYMRNGSCKYGSNCRFNHPDPTA 228
P + N GLP+R GE +CP+Y++ GSCKYG+ CR+NHP+ TA
Sbjct: 328 PALYHNSKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTA 370
Score = 60 bits (145), Expect = 2e-010
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Frame = +1
Query: 13 ECKYYLRPGGCKYGE-ACRYNHGKGKPLVAPVVELNFLGLPIRQGERECPYYMRNGSCKY 189
ECK+ R CK+ A R + + P V+L+ G P R+G CPYYM+ G+CKY
Sbjct: 434 ECKFGER---CKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKY 490
Query: 190 GSNCRFNHPDP 222
G+ C+F+HP P
Sbjct: 491 GATCKFDHPPP 501
>TAIR9_protein||AT1G29570.1 | Symbols: | zinc finger protein-related |
chr1:10335910-10337854 FORWARD
Length = 322
Score = 50 bits (119), Expect = 2e-007
Identities = 16/29 (55%), Positives = 25/29 (86%)
Frame = +1
Query: 130 PIRQGERECPYYMRNGSCKYGSNCRFNHP 216
P+R G+++C +Y++NG C+Y S+CRFNHP
Sbjct: 53 PVRPGKKDCQFYLKNGLCRYRSSCRFNHP 81
>TAIR9_protein||AT2G47850.3 | Symbols: | zinc finger (CCCH-type) family protein
| chr2:19595953-19598119 FORWARD
Length = 469
Score = 47 bits (109), Expect = 2e-006
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +1
Query: 130 PIRQGERECPYYMRNGSCKYGSNCRFNHPDPTAA 231
P R G +C YYMR G C YG+ CR+NHP A+
Sbjct: 43 PERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRAS 76
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,047,743,481
Number of Sequences: 33410
Number of Extensions: 2047743481
Number of Successful Extensions: 109010649
Number of sequences better than 0.0: 0
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