BLASTX 7.6.2
Query= RU10599 /QuerySize=341
(340 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G32810.2 | Symbols: | protein binding / zinc ... 155 5e-039
TAIR9_protein||AT4G10600.1 | Symbols: | PHD finger family prote... 118 8e-028
TAIR9_protein||AT1G33420.1 | Symbols: | PHD finger family prote... 60 3e-010
TAIR9_protein||AT2G01810.1 | Symbols: | PHD finger family prote... 58 1e-009
TAIR9_protein||AT1G66170.1 | Symbols: MMD1 | MMD1 (MALE MEIOCYTE... 55 9e-009
TAIR9_protein||AT5G22260.1 | Symbols: MS1 | MS1 (male sterility ... 50 2e-007
>TAIR9_protein||AT1G32810.2 | Symbols: | protein binding / zinc ion binding |
chr1:11881810-11885843 FORWARD
Length = 1069
Score = 155 bits (391), Expect = 5e-039
Identities = 68/92 (73%), Positives = 78/92 (84%)
Frame = +1
Query: 64 MKGRSHRLQSSDPPDDWVDESWTVDCLCGVTFDDGEEMVNCDECGVWVHTRCSRYVKGDD 243
MKGRS+R S+DP +DWVD WTVDC+CGV DDG EMV CD+CGVWVHTRCSR+V+G +
Sbjct: 1 MKGRSYRFSSTDPHEDWVDGLWTVDCVCGVNDDDGTEMVKCDDCGVWVHTRCSRFVEGQE 60
Query: 244 NFVCDKCKSRNSRNDSEETEVAQLLVELPTKT 339
F C KCKS+N+ NDSEETEVAQLLVELPTKT
Sbjct: 61 LFTCHKCKSKNNVNDSEETEVAQLLVELPTKT 92
>TAIR9_protein||AT4G10600.1 | Symbols: | PHD finger family protein |
chr4:6547934-6548647 REVERSE
Length = 238
Score = 118 bits (294), Expect = 8e-028
Identities = 49/73 (67%), Positives = 59/73 (80%)
Frame = +1
Query: 100 PPDDWVDESWTVDCLCGVTFDDGEEMVNCDECGVWVHTRCSRYVKGDDNFVCDKCKSRNS 279
P +DWV ESWTVDC+CGV FDDG+EMV+CDECGVWVHT CSRYVKGDD FVC KCK +N+
Sbjct: 3 PHEDWVYESWTVDCVCGVNFDDGKEMVDCDECGVWVHTWCSRYVKGDDLFVCHKCKIKNN 62
Query: 280 RNDSEETEVAQLL 318
++ + V + L
Sbjct: 63 EDELSKLSVTKSL 75
>TAIR9_protein||AT1G33420.1 | Symbols: | PHD finger family protein |
chr1:12121063-12123346 REVERSE
Length = 698
Score = 60 bits (143), Expect = 3e-010
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +1
Query: 121 ESWTVDCLCGVTFDDGEEMVNCDECGVWVHTRCSRYVKGD---DNFVCDKC 264
++W VDC CG DDGE M+ CD CGVW HTRC D F+C +C
Sbjct: 600 DNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRC 650
>TAIR9_protein||AT2G01810.1 | Symbols: | PHD finger family protein |
chr2:347537-349952 FORWARD
Length = 698
Score = 58 bits (138), Expect = 1e-009
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +1
Query: 121 ESWTVDCLCGVTFDDGEEMVNCDECGVWVHTRCSRYVKGDDN----FVCDKCKSRNSRND 288
+ WTVDC CG DDGE MV CD C VW HT C+ ++ D+ F+C+ C + R+
Sbjct: 632 DDWTVDCKCGARDDDGERMVACDACKVWHHTLCNS-IEDDEAVPSVFLCNMCYGDSLRSK 690
Query: 289 SEETEV 306
+
Sbjct: 691 KRNLSI 696
>TAIR9_protein||AT1G66170.1 | Symbols: MMD1 | MMD1 (MALE MEIOCYTE DEATH 1); DNA
binding / protein binding / zinc ion binding | chr1:24638793-24641222
REVERSE
Length = 705
Score = 55 bits (130), Expect = 9e-009
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +1
Query: 121 ESWTVDCLCGVTFDDGEEMVNCDECGVWVHTRCSRYVKGD---DNFVCDKC 264
++W V C+C DDGE M++CD C VW HTRC D FVC C
Sbjct: 603 DTWMVKCICRARDDDGERMISCDVCEVWQHTRCCGIDDSDTLPPLFVCSNC 653
>TAIR9_protein||AT5G22260.1 | Symbols: MS1 | MS1 (male sterility 1); DNA binding
/ transcription factor | chr5:7367707-7370192 REVERSE
Length = 673
Score = 50 bits (118), Expect = 2e-007
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 106 DDWVDESWTVDCLCGVTFDDGEEMVNCDECGVWVHTRCSRYVKGDD---NFVCDKC 264
DD + ++C CG T +DGE MV CD C VW HTRC ++ F+C C
Sbjct: 606 DDDKKKDKRIECECGATEEDGERMVCCDICEVWQHTRCVGVQHNEEVPRIFLCQSC 661
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,252,006,599
Number of Sequences: 33410
Number of Extensions: 2252006599
Number of Successful Extensions: 119374135
Number of sequences better than 0.0: 0
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