BLASTX 7.6.2
Query= RU11847 /QuerySize=250
(249 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G66350.1 | Symbols: RGL1, RGL | RGL1 (RGA-LIKE... 57 1e-009
TAIR9_protein||AT3G13840.1 | Symbols: | scarecrow transcription... 55 1e-008
TAIR9_protein||AT3G54220.1 | Symbols: SCR, SGR1 | SCR (SCARECROW... 55 1e-008
TAIR9_protein||AT1G14920.1 | Symbols: GAI, RGA2 | GAI (GIBBERELL... 54 1e-008
TAIR9_protein||AT3G03450.1 | Symbols: RGL2 | RGL2 (RGA-LIKE 2); ... 54 2e-008
TAIR9_protein||AT5G17490.1 | Symbols: RGL3 | RGL3 (RGA-LIKE PROT... 52 6e-008
TAIR9_protein||AT1G50420.1 | Symbols: SCL3, SCL-3 | SCL3; transc... 52 8e-008
TAIR9_protein||AT2G01570.1 | Symbols: RGA1, RGA | RGA1 (REPRESSO... 52 8e-008
TAIR9_protein||AT5G41920.1 | Symbols: | scarecrow transcription... 50 3e-007
TAIR9_protein||AT1G07530.1 | Symbols: SCL14, ATGRAS2, GRAS2 | SC... 49 4e-007
TAIR9_protein||AT1G50600.1 | Symbols: SCL5 | SCL5; transcription... 49 4e-007
TAIR9_protein||AT1G63100.1 | Symbols: | scarecrow transcription... 47 2e-006
TAIR9_protein||AT3G46600.1 | Symbols: | scarecrow transcription... 47 2e-006
TAIR9_protein||AT3G46600.2 | Symbols: | scarecrow transcription... 47 2e-006
TAIR9_protein||AT3G46600.3 | Symbols: | scarecrow transcription... 47 2e-006
TAIR9_protein||AT5G48150.1 | Symbols: PAT1 | PAT1 (phytochrome a... 46 3e-006
TAIR9_protein||AT5G48150.2 | Symbols: PAT1 | PAT1 (phytochrome a... 46 3e-006
TAIR9_protein||AT2G29060.1 | Symbols: | scarecrow transcription... 45 1e-005
>TAIR9_protein||AT1G66350.1 | Symbols: RGL1, RGL | RGL1 (RGA-LIKE 1);
transcription factor | chr1:24748327-24749862 FORWARD
Length = 512
Score = 57 bits (137), Expect = 1e-009
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = +3
Query: 120 IHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITG 224
+H+IDLG+ H LQWP+LI++LA RP GPP R+TG
Sbjct: 254 VHVIDLGLNHGLQWPALIQALALRPNGPPDFRLTG 288
>TAIR9_protein||AT3G13840.1 | Symbols: | scarecrow transcription factor family
protein | chr3:4555305-4556837 REVERSE
Length = 511
Score = 55 bits (130), Expect = 1e-008
Identities = 23/51 (45%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Frame = +3
Query: 81 MKLYVKDQKGKSSIHIIDLGMEHALQWPSLIRSLASRPEG-PPKLRITGFS 230
+++ +D K K +HIID+G+ H +QWP+L+ +L+ R EG PP++RIT S
Sbjct: 246 LQILAQDPKDKKDLHIIDIGVSHGMQWPTLLEALSCRLEGPPPRVRITVIS 296
>TAIR9_protein||AT3G54220.1 | Symbols: SCR, SGR1 | SCR (SCARECROW); protein
binding / protein homodimerization/ sequence-specific DNA binding /
transcription factor | chr3:20070550-20072625 FORWARD
Length = 654
Score = 55 bits (130), Expect = 1e-008
Identities = 24/44 (54%), Positives = 30/44 (68%)
Frame = +3
Query: 111 KSSIHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITGFSTNEE 242
+ S+HIIDL + LQWP L LASRP GPP +R+TG T+ E
Sbjct: 398 EDSVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGTSME 441
>TAIR9_protein||AT1G14920.1 | Symbols: GAI, RGA2 | GAI (GIBBERELLIC ACID
INSENSITIVE); transcription factor | chr1:5149414-5151015 FORWARD
Length = 534
Score = 54 bits (129), Expect = 1e-008
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = +3
Query: 105 KGKSSIHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITGFSTNEENN 248
+GK +H+ID M LQWP+L+++LA RP GPP R+TG +N
Sbjct: 266 QGKKRVHVIDFSMSQGLQWPALMQALALRPGGPPVFRLTGIGPPAPDN 313
>TAIR9_protein||AT3G03450.1 | Symbols: RGL2 | RGL2 (RGA-LIKE 2); transcription
factor | chr3:819636-821279 REVERSE
Length = 548
Score = 54 bits (127), Expect = 2e-008
Identities = 20/43 (46%), Positives = 30/43 (69%)
Frame = +3
Query: 120 IHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITGFSTNEENN 248
+H+IDLG+ +QWP+L+++LA RP GPP R+TG + N
Sbjct: 286 VHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGIGPPQTEN 328
>TAIR9_protein||AT5G17490.1 | Symbols: RGL3 | RGL3 (RGA-LIKE PROTEIN 3);
transcription factor | chr5:5764316-5765887 REVERSE
Length = 524
Score = 52 bits (123), Expect = 6e-008
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +3
Query: 120 IHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITG 224
+H+IDLG+ +QWP+L+++LA RP GPP R+TG
Sbjct: 259 VHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTG 293
>TAIR9_protein||AT1G50420.1 | Symbols: SCL3, SCL-3 | SCL3; transcription factor
| chr1:18678177-18679625 REVERSE
Length = 483
Score = 52 bits (122), Expect = 8e-008
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +3
Query: 57 LLSVSW-LQMKLYVKDQKGKSSIHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITGFST 233
+L VS+ L + ++ +G+ +H+IDL QW +L+++ SRPEGPP LRITG
Sbjct: 143 ILKVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLALLQAFNSRPEGPPHLRITGVHH 202
Query: 234 NEE 242
+E
Sbjct: 203 QKE 205
>TAIR9_protein||AT2G01570.1 | Symbols: RGA1, RGA | RGA1 (REPRESSOR OF GA1-3 1);
protein binding / transcription factor | chr2:255581-257344 REVERSE
Length = 588
Score = 52 bits (122), Expect = 8e-008
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +3
Query: 105 KGKSSIHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITGFSTNEENN 248
+GK +H+ID M LQWP+L+++LA R GPP R+TG +N
Sbjct: 318 EGKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDN 365
>TAIR9_protein||AT5G41920.1 | Symbols: | scarecrow transcription factor family
protein | chr5:16779982-16781199 FORWARD
Length = 406
Score = 50 bits (117), Expect = 3e-007
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = +3
Query: 108 GKSSIHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITGFSTNEE 242
G+ S+HIIDL + LQWP+L LASRP +RITGF ++ +
Sbjct: 148 GEDSVHIIDLDVMQGLQWPALFHILASRPRKLRSIRITGFGSSSD 192
>TAIR9_protein||AT1G07530.1 | Symbols: SCL14, ATGRAS2, GRAS2 | SCL14
(SCARECROW-LIKE 14); transcription factor | chr1:2313828-2316137
REVERSE
Length = 770
Score = 49 bits (116), Expect = 4e-007
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Frame = +3
Query: 114 SSIHIIDLGMEHALQWPSLIRSLA-SRPEGPPKLRITG 224
++IHIID G+ + QWP+LI L+ SRP G PKLRITG
Sbjct: 499 NTIHIIDFGISYGFQWPALIHRLSLSRPGGSPKLRITG 536
>TAIR9_protein||AT1G50600.1 | Symbols: SCL5 | SCL5; transcription factor |
chr1:18737398-18739547 REVERSE
Length = 598
Score = 49 bits (116), Expect = 4e-007
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +3
Query: 105 KGKSSIHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITG 224
K +S +HIID + QW SLIR+L +RP GPP +RITG
Sbjct: 330 KNESFVHIIDFQISQGGQWVSLIRALGARPGGPPNVRITG 369
>TAIR9_protein||AT1G63100.1 | Symbols: | scarecrow transcription factor family
protein | chr1:23399391-23401367 REVERSE
Length = 659
Score = 47 bits (111), Expect = 2e-006
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +3
Query: 105 KGKSSIHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITGFSTNE 239
+GK +HIID ++ LQWPS +SLASR P +RITG ++
Sbjct: 381 EGKERVHIIDFDIKQGLQWPSFFQSLASRINPPHHVRITGIGESK 425
>TAIR9_protein||AT3G46600.1 | Symbols: | scarecrow transcription factor family
protein | chr3:17158048-17159799 FORWARD
Length = 584
Score = 47 bits (111), Expect = 2e-006
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +3
Query: 114 SSIHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITG 224
+++HIID G+ + QWP LI++L+ R GPP LR+TG
Sbjct: 314 TTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTG 350
>TAIR9_protein||AT3G46600.2 | Symbols: | scarecrow transcription factor family
protein | chr3:17158379-17159799 FORWARD
Length = 454
Score = 47 bits (111), Expect = 2e-006
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +3
Query: 114 SSIHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITG 224
+++HIID G+ + QWP LI++L+ R GPP LR+TG
Sbjct: 184 TTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTG 220
>TAIR9_protein||AT3G46600.3 | Symbols: | scarecrow transcription factor family
protein | chr3:17158052-17159799 FORWARD
Length = 552
Score = 47 bits (111), Expect = 2e-006
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +3
Query: 114 SSIHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITG 224
+++HIID G+ + QWP LI++L+ R GPP LR+TG
Sbjct: 282 TTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTG 318
>TAIR9_protein||AT5G48150.1 | Symbols: PAT1 | PAT1 (phytochrome a signal
transduction 1); signal transducer/ transcription factor |
chr5:19522497-19524053 REVERSE
Length = 491
Score = 46 bits (108), Expect = 3e-006
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +3
Query: 105 KGKSSIHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITG 224
K ++ +HIID + QW +LI++ A+RP GPP++RITG
Sbjct: 223 KEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITG 262
>TAIR9_protein||AT5G48150.2 | Symbols: PAT1 | PAT1 (phytochrome a signal
transduction 1); signal transducer/ transcription factor |
chr5:19522497-19524053 REVERSE
Length = 491
Score = 46 bits (108), Expect = 3e-006
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +3
Query: 105 KGKSSIHIIDLGMEHALQWPSLIRSLASRPEGPPKLRITG 224
K ++ +HIID + QW +LI++ A+RP GPP++RITG
Sbjct: 223 KEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITG 262
>TAIR9_protein||AT2G29060.1 | Symbols: | scarecrow transcription factor family
protein | chr2:12481991-12486941 FORWARD
Length = 1337
Score = 45 bits (104), Expect = 1e-005
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +3
Query: 39 TKPHLTLLSVSWLQMKLYVKDQKGKSSIHIIDLGMEHALQWPSLIRSLASRPEGPPKLRI 218
+ P +TL+ + M L V K +HI+D G+ + QWP I+S++ R + P KLRI
Sbjct: 1043 SSPFVTLMYFFSIWMILDV--AKDAPVLHIVDFGILYGFQWPMFIQSISDRKDVPRKLRI 1100
Query: 219 TG 224
TG
Sbjct: 1101 TG 1102
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,403,403,375
Number of Sequences: 33410
Number of Extensions: 2403403375
Number of Successful Extensions: 130290479
Number of sequences better than 0.0: 0
|