BLASTX 7.6.2
Query= RU12062 /QuerySize=592
(591 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G38560.1 | Symbols: TFIIS | TFIIS (TRANSCRIPT ... 106 1e-023
TAIR9_protein||AT2G33300.1 | Symbols: | FUNCTIONS IN: molecular... 48 4e-006
TAIR9_protein||AT2G33090.1 | Symbols: | FUNCTIONS IN: molecular... 47 1e-005
>TAIR9_protein||AT2G38560.1 | Symbols: TFIIS | TFIIS (TRANSCRIPT ELONGATION
FACTOR IIS); DNA binding / RNA polymerase II transcription elongation
factor/ transcription factor | chr2:16134802-16136319 FORWARD
Length = 379
Score = 106 bits (264), Expect = 1e-023
Identities = 74/202 (36%), Positives = 108/202 (53%), Gaps = 16/202 (7%)
Frame = -2
Query: 581 VFDDVTKAADAAKSCDG----GAEESLCLEALDRLNNFPVSYQLLVSTQVGKRLKNLTKH 414
+F+ KAADAA + DG G E S C++AL +L FPV+Y LV+TQVGK+L++L KH
Sbjct: 8 LFEGAKKAADAA-ALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKLRSLAKH 66
Query: 413 PRKKIQTFALSLMESWKQIVIEETS---KNDVKNGRYERKDSLKRESNPNSPRPVKIQKT 243
P + I++ A L+E WK++VIEET+ K + NG E K + P++P PVK+QK
Sbjct: 67 PVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAPVKVQKL 126
Query: 242 AAVKVEKVPKAEQGDIKKVDHDVKP--SSEKAYSSESGTTDSKVENHNVVKTEKAPSADN 69
K K E+ K+ D+ V E+ T +K++ ++ S DN
Sbjct: 127 QRGDSAKSIKVER---KEPDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDEKVSKDN 183
Query: 68 VKVEKVARELKKPVSGPPKLTS 3
K K + PPKLT+
Sbjct: 184 QSSMKAP---AKAANAPPKLTA 202
>TAIR9_protein||AT2G33300.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS
InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription
elongation factor, TFIIS/CRSP70, N-terminal, sub-type
(InterPro:IPR003617); BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT2G33090.1); Has 44 Blast hits to 44 proteins in
10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). |
chr2:14113130-14113960 FORWARD
Length = 277
Score = 48 bits (112), Expect = 4e-006
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Frame = -2
Query: 581 VFDDVTKAADAAKS---CDGGAEESLCLEALDRLNNFPVSYQLLVSTQVGKRLKNLTKHP 411
+F+ K+AD A + E S+C++ L L FP+S + + + ++ RL+NLTKH
Sbjct: 185 LFEIAKKSADFANAKGILASEVETSMCVDTLALLLEFPISARAMETRKLMVRLENLTKHK 244
Query: 410 RKKIQTFALSLMESWKQIVIEETSKNDVK 324
+KI L++ W+Q + ++ + K
Sbjct: 245 NRKICNSVSKLLQCWRQSIRDQQLRESRK 273
>TAIR9_protein||AT2G33090.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS
InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), Transcription
elongation factor, TFIIS/CRSP70, N-terminal, sub-type
(InterPro:IPR003617); BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT2G33300.1); Has 40 Blast hits to 40 proteins in
10 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants -
36; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). |
chr2:14035215-14035961 REVERSE
Length = 249
Score = 47 bits (109), Expect = 1e-005
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Frame = -2
Query: 581 VFDDVTKAADAAKS---CDGGAEESLCLEALDRLNNFPVSYQLLVSTQVGKRLKNLTKHP 411
+F+ K+AD A + E S+C++ L L FP+S + + + ++ RL++LTKH
Sbjct: 157 LFEIAKKSADFANAKGILASEVETSMCVDTLTLLLEFPISARDMETRKLMVRLEHLTKHK 216
Query: 410 RKKIQTFALSLMESWKQIVIEETSKNDVK 324
+KI A L++ W++ + E+ + K
Sbjct: 217 NRKICNSASKLLQCWRESIREQQLRESRK 245
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,432,861,171
Number of Sequences: 33410
Number of Extensions: 2432861171
Number of Successful Extensions: 130386330
Number of sequences better than 0.0: 0
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