BLASTX 7.6.2
Query= RU12307 /QuerySize=237
(236 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G27752.1 | Symbols: | FUNCTIONS IN: molecular... 62 6e-011
TAIR9_protein||AT1G27752.2 | Symbols: | FUNCTIONS IN: molecular... 62 6e-011
>TAIR9_protein||AT1G27752.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue
(InterPro:IPR003892); Has 330 Blast hits to 312 proteins in 96 species:
Archae - 0; Bacteria - 26; Metazoa - 143; Fungi - 77; Plants - 32;
Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). |
chr1:9662250-9667318 FORWARD
Length = 874
Score = 62 bits (149), Expect = 6e-011
Identities = 31/56 (55%), Positives = 42/56 (75%), Gaps = 4/56 (7%)
Frame = -3
Query: 234 SLITEAQKELIHGLGRGGNLPLGAVKKLTEYSEQQD----SHVDISQSEGRGKGYN 79
SL+ EA+ + I GLGRGGN+PLGAV+KLTEY Q+D S+V+++ S+GR G N
Sbjct: 745 SLVNEAEGDKILGLGRGGNIPLGAVRKLTEYQAQRDEKGQSNVNVNPSDGRENGRN 800
>TAIR9_protein||AT1G27752.2 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro
DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); Has 307
Blast hits to 291 proteins in 93 species: Archae - 0; Bacteria - 26;
Metazoa - 132; Fungi - 77; Plants - 29; Viruses - 0; Other Eukaryotes -
43 (source: NCBI BLink). | chr1:9663144-9667318 FORWARD
Length = 657
Score = 62 bits (149), Expect = 6e-011
Identities = 31/56 (55%), Positives = 42/56 (75%), Gaps = 4/56 (7%)
Frame = -3
Query: 234 SLITEAQKELIHGLGRGGNLPLGAVKKLTEYSEQQD----SHVDISQSEGRGKGYN 79
SL+ EA+ + I GLGRGGN+PLGAV+KLTEY Q+D S+V+++ S+GR G N
Sbjct: 528 SLVNEAEGDKILGLGRGGNIPLGAVRKLTEYQAQRDEKGQSNVNVNPSDGRENGRN 583
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,462,713,534
Number of Sequences: 33410
Number of Extensions: 2462713534
Number of Successful Extensions: 130446801
Number of sequences better than 0.0: 0
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