BLASTX 7.6.2
Query= RU12312 /QuerySize=359
(358 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G06770.1 | Symbols: | KH domain-containing pr... 102 6e-023
TAIR9_protein||AT3G12130.1 | Symbols: | KH domain-containing pr... 69 3e-013
TAIR9_protein||AT2G35430.1 | Symbols: | zinc finger (CCCH-type)... 49 4e-007
TAIR9_protein||AT1G32360.1 | Symbols: | zinc finger (CCCH-type)... 46 4e-006
>TAIR9_protein||AT5G06770.1 | Symbols: | KH domain-containing protein / zinc
finger (CCCH type) family protein | chr5:2090937-2092787 REVERSE
Length = 241
Score = 102 bits (252), Expect = 6e-023
Identities = 46/89 (51%), Positives = 60/89 (67%)
Frame = -2
Query: 357 EHESDPKLRNIELEGTFDQIKDASAMVQDIIVNVSSAAGPHMRNPSMGASQGSSNFKTKL 178
+HE DP L+ IELEGTF+QI AS MV+++I + S P G SN+KTK+
Sbjct: 151 DHERDPNLKIIELEGTFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKPHPGSNYKTKI 210
Query: 177 CENFTKGQCTFGDRCHFAHGAEELRRGGM 91
C+ ++KG CT+GDRCHFAHG ELRR G+
Sbjct: 211 CDRYSKGNCTYGDRCHFAHGESELRRSGI 239
>TAIR9_protein||AT3G12130.1 | Symbols: | KH domain-containing protein / zinc
finger (CCCH type) family protein | chr3:3864486-3866406 REVERSE
Length = 249
Score = 69 bits (168), Expect = 3e-013
Identities = 29/44 (65%), Positives = 33/44 (75%)
Frame = -2
Query: 222 SMGASQGSSNFKTKLCENFTKGQCTFGDRCHFAHGAEELRRGGM 91
S G SNFKTK+CE F+KG CTFGDRCHFAHG ELR+ G+
Sbjct: 204 SEGKPHPGSNFKTKICERFSKGNCTFGDRCHFAHGEAELRKSGI 247
Score = 50 bits (119), Expect = 2e-007
Identities = 23/38 (60%), Positives = 31/38 (81%)
Frame = -2
Query: 357 EHESDPKLRNIELEGTFDQIKDASAMVQDIIVNVSSAA 244
+HE DP L+NI LEGT +QI +ASAMV+D+I ++SAA
Sbjct: 151 DHERDPNLKNIVLEGTLEQISEASAMVKDLIGRLNSAA 188
>TAIR9_protein||AT2G35430.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr2:14901014-14902257 REVERSE
Length = 253
Score = 49 bits (116), Expect = 4e-007
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -2
Query: 264 VNVSSAAGPHMRNPSMGASQ-GSSNFKTKLCENFTKGQCTF-GDRCHFAHGAEELR 103
+N A P + S +S+ G S FKTKLC F G C + CHFAH AEELR
Sbjct: 47 INSDGAESPSKKTRSSSSSEIGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELR 102
>TAIR9_protein||AT1G32360.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr1:11673325-11675162 FORWARD
Length = 385
Score = 46 bits (107), Expect = 4e-006
Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -2
Query: 198 SNFKTKLCENF-TKGQCTFGDRCHFAHGAEELRRGG 94
SN+KT++C + G C FG +CHFAHGA EL R G
Sbjct: 259 SNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFG 294
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,462,713,534
Number of Sequences: 33410
Number of Extensions: 2462713534
Number of Successful Extensions: 130446801
Number of sequences better than 0.0: 0
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