BLASTX 7.6.2
Query= RU12792 /QuerySize=372
(371 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G12130.1 | Symbols: | KH domain-containing pr... 67 3e-012
TAIR9_protein||AT5G06770.1 | Symbols: | KH domain-containing pr... 50 4e-007
TAIR9_protein||AT3G19360.1 | Symbols: | zinc finger (CCCH-type)... 47 2e-006
TAIR9_protein||AT1G32360.1 | Symbols: | zinc finger (CCCH-type)... 46 6e-006
TAIR9_protein||AT2G35430.1 | Symbols: | zinc finger (CCCH-type)... 46 6e-006
>TAIR9_protein||AT3G12130.1 | Symbols: | KH domain-containing protein / zinc
finger (CCCH type) family protein | chr3:3864486-3866406 REVERSE
Length = 249
Score = 67 bits (161), Expect = 3e-012
Identities = 41/107 (38%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Frame = +1
Query: 79 KTRLCNKYNTAEGCKFGDKCHFAH---GEY-------ELGRPTAQSYDDPXXXXXXXXXX 228
K++ C K+ + GC FG+ CHF H G Y +G P Q +
Sbjct: 38 KSKPCTKFFSTSGCPFGENCHFLHYVPGGYNAVSQMTNMGPPIPQVSRNMQGSGNGGRFS 97
Query: 229 XXXNEPPPPSHGGAGRFGAIANAKISVDASLAGAIIGKNGLNSKQIC 369
P G FG A A+ SVDASLAGAIIGK G++SKQIC
Sbjct: 98 GRGESGP----GHVSNFGDSATARFSVDASLAGAIIGKGGVSSKQIC 140
>TAIR9_protein||AT5G06770.1 | Symbols: | KH domain-containing protein / zinc
finger (CCCH type) family protein | chr5:2090937-2092787 REVERSE
Length = 241
Score = 50 bits (117), Expect = 4e-007
Identities = 26/39 (66%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +1
Query: 253 PSHGGAGRFGAIANAKISVDASLAGAIIGKNGLNSKQIC 369
P G FGA + +KISVDASLAGAIIGK G++SKQIC
Sbjct: 103 PGSGPVSIFGA-STSKISVDASLAGAIIGKGGIHSKQIC 140
Score = 46 bits (107), Expect = 6e-006
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Frame = +1
Query: 52 PDGSSPPA--VKTRLCNKYNTAEGCKFGDKCHFAHGEYELGR 171
P+G P KT++C++Y+ C +GD+CHFAHGE EL R
Sbjct: 196 PEGKPHPGSNYKTKICDRYSKG-NCTYGDRCHFAHGESELRR 236
>TAIR9_protein||AT3G19360.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr3:6707544-6708864 FORWARD
Length = 387
Score = 47 bits (111), Expect = 2e-006
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +1
Query: 79 KTRLCNKYNTAEGCKFGDKCHFAHGEYEL 165
KTRLC K++ C FGDKCHFAHG+ EL
Sbjct: 271 KTRLCMKFDITGQCPFGDKCHFAHGQAEL 299
>TAIR9_protein||AT1G32360.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr1:11673325-11675162 FORWARD
Length = 385
Score = 46 bits (107), Expect = 6e-006
Identities = 20/35 (57%), Positives = 22/35 (62%)
Frame = +1
Query: 67 PPAVKTRLCNKYNTAEGCKFGDKCHFAHGEYELGR 171
P KTR+CNK+ C FG KCHFAHG EL R
Sbjct: 258 PSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHR 292
>TAIR9_protein||AT2G35430.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr2:14901014-14902257 REVERSE
Length = 253
Score = 46 bits (107), Expect = 6e-006
Identities = 19/32 (59%), Positives = 21/32 (65%)
Frame = +1
Query: 70 PAVKTRLCNKYNTAEGCKFGDKCHFAHGEYEL 165
P KTR+CNK+ T C FG CHFAHG EL
Sbjct: 142 PNWKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,520,843,449
Number of Sequences: 33410
Number of Extensions: 2520843449
Number of Successful Extensions: 130515684
Number of sequences better than 0.0: 0
|