BLASTX 7.6.2
Query= RU13323 /QuerySize=407
(406 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G14920.1 | Symbols: GAI, RGA2 | GAI (GIBBERELL... 95 1e-020
TAIR9_protein||AT2G01570.1 | Symbols: RGA1, RGA | RGA1 (REPRESSO... 91 3e-019
TAIR9_protein||AT1G66350.1 | Symbols: RGL1, RGL | RGL1 (RGA-LIKE... 90 4e-019
TAIR9_protein||AT3G03450.1 | Symbols: RGL2 | RGL2 (RGA-LIKE 2); ... 87 4e-018
TAIR9_protein||AT5G17490.1 | Symbols: RGL3 | RGL3 (RGA-LIKE PROT... 82 7e-017
TAIR9_protein||AT1G50600.1 | Symbols: SCL5 | SCL5; transcription... 63 5e-011
TAIR9_protein||AT2G04890.1 | Symbols: SCL21 | SCL21 (SCARECROW-L... 63 5e-011
TAIR9_protein||AT4G17230.1 | Symbols: SCL13 | SCL13 (Scarecrow-l... 62 8e-011
TAIR9_protein||AT5G48150.1 | Symbols: PAT1 | PAT1 (phytochrome a... 62 1e-010
TAIR9_protein||AT5G48150.2 | Symbols: PAT1 | PAT1 (phytochrome a... 62 1e-010
TAIR9_protein||AT1G50420.1 | Symbols: SCL3, SCL-3 | SCL3; transc... 60 4e-010
TAIR9_protein||AT1G07530.1 | Symbols: SCL14, ATGRAS2, GRAS2 | SC... 57 3e-009
TAIR9_protein||AT1G07520.1 | Symbols: | scarecrow transcription... 54 2e-008
TAIR9_protein||AT2G29060.1 | Symbols: | scarecrow transcription... 52 8e-008
TAIR9_protein||AT2G37650.1 | Symbols: | scarecrow-like transcri... 50 5e-007
>TAIR9_protein||AT1G14920.1 | Symbols: GAI, RGA2 | GAI (GIBBERELLIC ACID
INSENSITIVE); transcription factor | chr1:5149414-5151015 FORWARD
Length = 534
Score = 95 bits (234), Expect = 1e-020
Identities = 44/78 (56%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Frame = +2
Query: 170 LERFTEALYYYSNMFDSLEACGAMQPDKTLAEMYIQREICNVVCCEGLARVERHEPLSKW 349
L+RFTE+L+YYS +FDSLE + Q DK ++E+Y+ ++ICNVV C+G RVERHE LS+W
Sbjct: 411 LDRFTESLHYYSTLFDSLEGVPSGQ-DKVMSEVYLGKQICNVVACDGPDRVERHETLSQW 469
Query: 350 RTRLELAGFSPLHVGVNA 403
R R AGF+ H+G NA
Sbjct: 470 RNRFGSAGFAAAHIGSNA 487
Score = 53 bits (125), Expect = 6e-008
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Frame = +1
Query: 7 EAVAVNSIMQLHRLLGSDSNRNSPIEMMLGWIRNLNPKIVTVVEQEADHNKAGFFGAVHG 186
E+VAVNS+ +LH+LLG R I+ +LG + + P+I TVVEQE++HN F
Sbjct: 361 ESVAVNSVFELHKLLG----RPGAIDKVLGVVNQIKPEIFTVVEQESNHNSPIFLDRF-- 414
Query: 187 GSLLLLQYVRLARSLRRHAAGQD 255
+ L Y L SL +GQD
Sbjct: 415 -TESLHYYSTLFDSLEGVPSGQD 436
>TAIR9_protein||AT2G01570.1 | Symbols: RGA1, RGA | RGA1 (REPRESSOR OF GA1-3 1);
protein binding / transcription factor | chr2:255581-257344 REVERSE
Length = 588
Score = 91 bits (223), Expect = 3e-019
Identities = 42/78 (53%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Frame = +2
Query: 170 LERFTEALYYYSNMFDSLEACGAMQPDKTLAEMYIQREICNVVCCEGLARVERHEPLSKW 349
L+RFTE+L+YYS +FDSLE Q DK ++E+Y+ ++ICN+V CEG RVERHE LS+W
Sbjct: 463 LDRFTESLHYYSTLFDSLEGVPNSQ-DKVMSEVYLGKQICNLVACEGPDRVERHETLSQW 521
Query: 350 RTRLELAGFSPLHVGVNA 403
R +G +P H+G NA
Sbjct: 522 GNRFGSSGLAPAHLGSNA 539
Score = 53 bits (125), Expect = 6e-008
Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 4/50 (8%)
Frame = +1
Query: 7 EAVAVNSIMQLHRLLGSDSNRNSPIEMMLGWIRNLNPKIVTVVEQEADHN 156
EAVAVNS+ +LH+LLG R IE +LG ++ + P I TVVEQE++HN
Sbjct: 413 EAVAVNSVFELHKLLG----RPGGIEKVLGVVKQIKPVIFTVVEQESNHN 458
>TAIR9_protein||AT1G66350.1 | Symbols: RGL1, RGL | RGL1 (RGA-LIKE 1);
transcription factor | chr1:24748327-24749862 FORWARD
Length = 512
Score = 90 bits (222), Expect = 4e-019
Identities = 41/78 (52%), Positives = 58/78 (74%), Gaps = 2/78 (2%)
Frame = +2
Query: 170 LERFTEALYYYSNMFDSLEACGAMQPDKTLAEMYIQREICNVVCCEGLARVERHEPLSKW 349
L+RFTE+L+YYS++FDSLE G D+ ++E+++ R+I N+V CEG RVERHE L++W
Sbjct: 389 LDRFTESLHYYSSLFDSLE--GPPSQDRVMSELFLGRQILNLVACEGEDRVERHETLNQW 446
Query: 350 RTRLELAGFSPLHVGVNA 403
R R L GF P+ +G NA
Sbjct: 447 RNRFGLGGFKPVSIGSNA 464
Score = 50 bits (117), Expect = 5e-007
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Frame = +1
Query: 7 EAVAVNSIMQLHRLLGSDSNRNSPIEMMLGWIRNLNPKIVTVVEQEADHNKAGF 168
E+VAVNS+ +LHRLL + I+ L I+++ P I+TVVEQEA+HN F
Sbjct: 339 ESVAVNSVFELHRLLAHPGS----IDKFLSTIKSIRPDIMTVVEQEANHNGTVF 388
>TAIR9_protein||AT3G03450.1 | Symbols: RGL2 | RGL2 (RGA-LIKE 2); transcription
factor | chr3:819636-821279 REVERSE
Length = 548
Score = 87 bits (213), Expect = 4e-018
Identities = 40/79 (50%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Frame = +2
Query: 170 LERFTEALYYYSNMFDSLEACGAM-QPDKTLAEMYIQREICNVVCCEGLARVERHEPLSK 346
L+RF EAL+YYS++FDSLE ++ D+ ++E+Y+ R+I NVV EG RVERHE ++
Sbjct: 425 LDRFNEALHYYSSLFDSLEDSYSLPSQDRVMSEVYLGRQILNVVAAEGSDRVERHETAAQ 484
Query: 347 WRTRLELAGFSPLHVGVNA 403
WR R++ AGF P+H+G +A
Sbjct: 485 WRIRMKSAGFDPIHLGSSA 503
Score = 50 bits (119), Expect = 3e-007
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 4/50 (8%)
Frame = +1
Query: 7 EAVAVNSIMQLHRLLGSDSNRNSPIEMMLGWIRNLNPKIVTVVEQEADHN 156
E + VNS+ +LHRLL R+ IE +L ++ + P IVTVVEQEA+HN
Sbjct: 375 ETLVVNSVFELHRLLA----RSGSIEKLLNTVKAIKPSIVTVVEQEANHN 420
>TAIR9_protein||AT5G17490.1 | Symbols: RGL3 | RGL3 (RGA-LIKE PROTEIN 3);
transcription factor | chr5:5764316-5765887 REVERSE
Length = 524
Score = 82 bits (202), Expect = 7e-017
Identities = 40/80 (50%), Positives = 60/80 (75%), Gaps = 3/80 (3%)
Frame = +2
Query: 170 LERFTEALYYYSNMFDSLEACGAMQP--DKTLAEMYIQREICNVVCCEGLARVERHEPLS 343
L+RF EAL+YYS++FDSLE G + P D+ ++E+Y+ R+I N+V EG R+ERHE L+
Sbjct: 396 LDRFNEALHYYSSLFDSLED-GVVIPSQDRVMSEVYLGRQILNLVATEGSDRIERHETLA 454
Query: 344 KWRTRLELAGFSPLHVGVNA 403
+WR R+ AGF P+++G +A
Sbjct: 455 QWRKRMGSAGFDPVNLGSDA 474
>TAIR9_protein||AT1G50600.1 | Symbols: SCL5 | SCL5; transcription factor |
chr1:18737398-18739547 REVERSE
Length = 598
Score = 63 bits (152), Expect = 5e-011
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Frame = +2
Query: 170 LERFTEALYYYSNMFDSLEACGAMQPDK--TLAEMYIQREICNVVCCEGLARVERHEPLS 343
L RF E + +Y +F+S++ A + + + + RE+ N++ CEG+ R ERHEPL
Sbjct: 478 LPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIACEGVEREERHEPLG 537
Query: 344 KWRTRLELAGFSP 382
KWR+R +AGF P
Sbjct: 538 KWRSRFHMAGFKP 550
>TAIR9_protein||AT2G04890.1 | Symbols: SCL21 | SCL21 (SCARECROW-LIKE 21);
transcription factor | chr2:1720575-1721816 REVERSE
Length = 414
Score = 63 bits (152), Expect = 5e-011
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Frame = +2
Query: 170 LERFTEALYYYSNMFDSLEACGAMQPDKTLAEMYIQ-----REICNVVCCEGLARVERHE 334
L RF E L YY+ MF+S++ M P + I+ R++ N++ CEG R+ERHE
Sbjct: 294 LPRFLETLSYYTAMFESID---VMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHE 350
Query: 335 PLSKWRTRLELAGFSP 382
L KW++R +AGF P
Sbjct: 351 LLGKWKSRFSMAGFEP 366
>TAIR9_protein||AT4G17230.1 | Symbols: SCL13 | SCL13 (Scarecrow-like 13);
transcription factor | chr4:9661218-9662807 REVERSE
Length = 530
Score = 62 bits (150), Expect = 8e-011
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Frame = +2
Query: 110 LTRRLSPSW----SKKRTTTRQGSLERFTEALYYYSNMFDSLEACGAMQPDKTL-AEMY- 271
L + LSP ++ T L RF E L YY+ MF+S++A + + AE +
Sbjct: 382 LIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRISAEQHC 441
Query: 272 IQREICNVVCCEGLARVERHEPLSKWRTRLELAGFSPLHVGVNA 403
+ R+I N++ CE RVERHE L WR R+ +AGF+ V +A
Sbjct: 442 VARDIVNMIACEESERVERHEVLGIWRVRMMMAGFTGWPVSTSA 485
>TAIR9_protein||AT5G48150.1 | Symbols: PAT1 | PAT1 (phytochrome a signal
transduction 1); signal transducer/ transcription factor |
chr5:19522497-19524053 REVERSE
Length = 491
Score = 62 bits (149), Expect = 1e-010
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +2
Query: 140 KKRTTTRQGSLERFTEALYYYSNMFDSLEACGAMQPDK--TLAEMYIQREICNVVCCEGL 313
++ T RF E + YY+ MF+S++ + + + + R++ N++ CEG
Sbjct: 361 QESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLARDVVNIIACEGA 420
Query: 314 ARVERHEPLSKWRTRLELAGFSP 382
RVERHE L KWR+R +AGF+P
Sbjct: 421 DRVERHELLGKWRSRFGMAGFTP 443
Score = 46 bits (108), Expect = 6e-006
Identities = 22/57 (38%), Positives = 36/57 (63%)
Frame = +1
Query: 1 PKEAVAVNSIMQLHRLLGSDSNRNSPIEMMLGWIRNLNPKIVTVVEQEADHNKAGFF 171
P EA+AVN LH + + + + +L +++L+PK+VT+VEQE++ N A FF
Sbjct: 315 PGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFF 371
>TAIR9_protein||AT5G48150.2 | Symbols: PAT1 | PAT1 (phytochrome a signal
transduction 1); signal transducer/ transcription factor |
chr5:19522497-19524053 REVERSE
Length = 491
Score = 62 bits (149), Expect = 1e-010
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +2
Query: 140 KKRTTTRQGSLERFTEALYYYSNMFDSLEACGAMQPDK--TLAEMYIQREICNVVCCEGL 313
++ T RF E + YY+ MF+S++ + + + + R++ N++ CEG
Sbjct: 361 QESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLARDVVNIIACEGA 420
Query: 314 ARVERHEPLSKWRTRLELAGFSP 382
RVERHE L KWR+R +AGF+P
Sbjct: 421 DRVERHELLGKWRSRFGMAGFTP 443
Score = 46 bits (108), Expect = 6e-006
Identities = 22/57 (38%), Positives = 36/57 (63%)
Frame = +1
Query: 1 PKEAVAVNSIMQLHRLLGSDSNRNSPIEMMLGWIRNLNPKIVTVVEQEADHNKAGFF 171
P EA+AVN LH + + + + +L +++L+PK+VT+VEQE++ N A FF
Sbjct: 315 PGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFF 371
>TAIR9_protein||AT1G50420.1 | Symbols: SCL3, SCL-3 | SCL3; transcription factor
| chr1:18678177-18679625 REVERSE
Length = 483
Score = 60 bits (144), Expect = 4e-010
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +2
Query: 170 LERFTEALYYYSNMFDSLE--ACGAMQPDKTLAEMYIQREICNVVCCEGLARVERHEPLS 343
+ER E+LY Y+ +FD LE Q + +M EI N++ CEG R ERHE L
Sbjct: 359 MERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMLFGEEIKNIISCEGFERRERHEKLE 418
Query: 344 KWRTRLELAGFSPLHVGVNAL 406
KW R++LAGF + + A+
Sbjct: 419 KWSQRIDLAGFGNVPLSYYAM 439
>TAIR9_protein||AT1G07530.1 | Symbols: SCL14, ATGRAS2, GRAS2 | SCL14
(SCARECROW-LIKE 14); transcription factor | chr1:2313828-2316137
REVERSE
Length = 770
Score = 57 bits (137), Expect = 3e-009
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Frame = +2
Query: 176 RFTEALYYYSNMFDSLEACGAMQPDKTL--AEMYIQREICNVVCCEGLARVERHEPLSKW 349
RF EAL++YS +FD ++ A + + L + + REI NVV CEG RVER E +W
Sbjct: 647 RFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFYGREIVNVVACEGTERVERPETYKQW 706
Query: 350 RTRLELAGFSPL 385
+ RL AGF L
Sbjct: 707 QARLIRAGFRQL 718
>TAIR9_protein||AT1G07520.1 | Symbols: | scarecrow transcription factor family
protein | chr1:2309718-2311805 REVERSE
Length = 696
Score = 54 bits (129), Expect = 2e-008
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 8/107 (7%)
Frame = +2
Query: 62 RTGILRLK*CWDGSEILTRRLSPSWSKKRTTTRQGSLERFTEALYYYSNMFDSLEACGAM 241
R G L+L + + L+ ++ S++ TT RF EAL++YS +FD A +
Sbjct: 542 RDGFLKLIRDMNPNVFLSSTVNGSFNAPFFTT------RFKEALFHYSALFDLFGATLSK 595
Query: 242 Q-PDKTLAE-MYIQREICNVVCCEGLARVERHEPLSKWRTRLELAGF 376
+ P++ E + RE+ NV+ CEG+ RVER E +W+ R+ AGF
Sbjct: 596 ENPERIHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMIRAGF 642
>TAIR9_protein||AT2G29060.1 | Symbols: | scarecrow transcription factor family
protein | chr2:12481991-12486941 FORWARD
Length = 1337
Score = 52 bits (124), Expect = 8e-008
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +2
Query: 176 RFTEALYYYSNMFDSLEA-CGAMQPDKTLAEM-YIQREICNVVCCEGLARVERHEPLSKW 349
RF E L++YS++FD + P + + E + REI NVV CEG RVER E +W
Sbjct: 573 RFREVLFHYSSLFDMCDTNLTREDPMRVMFEKEFYGREIMNVVACEGTERVERPESYKQW 632
Query: 350 RTRLELAGF 376
+ R AGF
Sbjct: 633 QARAMRAGF 641
Score = 48 bits (113), Expect = 2e-006
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 170 LERFTEALYYYSNMFDSLEACGAMQPDKTL--AEMYIQREICNVVCCEGLARVERHEPLS 343
+ RF EA+Y+YS +FD ++ + + + RE NV+ CE RVER E
Sbjct: 1213 ISRFKEAVYHYSALFDMFDSTLPRDNKERIRFEREFYGREAMNVIACEEADRVERPETYR 1272
Query: 344 KWRTRLELAGF 376
+W+ R+ AGF
Sbjct: 1273 QWQVRMVRAGF 1283
>TAIR9_protein||AT2G37650.1 | Symbols: | scarecrow-like transcription factor 9
(SCL9) | chr2:15792623-15794779 FORWARD
Length = 719
Score = 50 bits (117), Expect = 5e-007
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +2
Query: 176 RFTEALYYYSNMFDSLEACGAMQPDKTL-AEMYI-QREICNVVCCEGLARVERHEPLSKW 349
RF EAL+++S++FD LE + ++ + EM + RE NV+ CEG RVER E +W
Sbjct: 595 RFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQW 654
Query: 350 RTRLELAG 373
R +G
Sbjct: 655 HVRAMRSG 662
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,579,136,587
Number of Sequences: 33410
Number of Extensions: 2579136587
Number of Successful Extensions: 135958269
Number of sequences better than 0.0: 0
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