BLASTX 7.6.2
Query= RU13456 /QuerySize=276
(275 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G37520.1 | Symbols: | PHD finger family prote... 121 1e-028
TAIR9_protein||AT3G53680.1 | Symbols: | PHD finger transcriptio... 109 4e-025
TAIR9_protein||AT2G36720.1 | Symbols: | PHD finger transcriptio... 91 9e-020
TAIR9_protein||AT1G05380.1 | Symbols: | DNA binding | chr1:1577... 74 1e-014
TAIR9_protein||AT1G05380.2 | Symbols: | DNA binding | chr1:1577... 74 1e-014
TAIR9_protein||AT5G36740.1 | Symbols: | PHD finger family prote... 65 9e-012
TAIR9_protein||AT5G36670.1 | Symbols: | PHD finger family prote... 65 9e-012
TAIR9_protein||AT5G58610.1 | Symbols: | PHD finger transcriptio... 62 8e-011
TAIR9_protein||AT5G35210.1 | Symbols: | peptidase M50 family pr... 60 2e-010
TAIR9_protein||AT5G35210.2 | Symbols: | peptidase M50 family pr... 60 2e-010
TAIR9_protein||AT5G63900.1 | Symbols: | PHD finger family prote... 58 8e-010
TAIR9_protein||AT5G12400.1 | Symbols: | PHD finger transcriptio... 58 1e-009
TAIR9_protein||AT5G22760.1 | Symbols: | PHD finger family prote... 56 4e-009
TAIR9_protein||AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REM... 50 2e-007
TAIR9_protein||AT4G14920.1 | Symbols: | DNA binding / protein b... 50 3e-007
>TAIR9_protein||AT2G37520.1 | Symbols: | PHD finger family protein |
chr2:15745033-15749615 REVERSE
Length = 855
Score = 121 bits (302), Expect = 1e-028
Identities = 55/88 (62%), Positives = 69/88 (78%), Gaps = 4/88 (4%)
Frame = +3
Query: 6 AGMSARRQPYRHIYISNGLTLHDIATSLANGQNLTTGASDGSDDMCAVCGHDTGKMILCD 185
AGM+ARRQPYRHI+IS+GL+LHDIA SLANG +TTG SDDMC++CG D G ++LC
Sbjct: 454 AGMAARRQPYRHIFISSGLSLHDIAMSLANGHVITTG---DSDDMCSICG-DGGDLLLCA 509
Query: 186 GCPRAFHEACLNSEWIPESDWHCPNCRD 269
GCP+AFH ACL + +PE W+C +C D
Sbjct: 510 GCPQAFHTACLKFQSMPEGTWYCSSCND 537
>TAIR9_protein||AT3G53680.1 | Symbols: | PHD finger transcription factor,
putative | chr3:19892863-19897412 REVERSE
Length = 840
Score = 109 bits (271), Expect = 4e-025
Identities = 49/88 (55%), Positives = 67/88 (76%), Gaps = 3/88 (3%)
Frame = +3
Query: 6 AGMSARRQPYRHIYISNGLTLHDIATSLANGQNLTTGASDGSDDMCAVCGHDTGKMILCD 185
AGM+ RRQPYR I+IS+GL+LHDIA SLA+G ++ T + SDDMC++CG+ G ++LC
Sbjct: 446 AGMAGRRQPYRRIHISSGLSLHDIAVSLADGGHVIT--TGDSDDMCSICGNG-GDLLLCA 502
Query: 186 GCPRAFHEACLNSEWIPESDWHCPNCRD 269
GCP+AFH ACL + +PE W+C +C D
Sbjct: 503 GCPQAFHTACLKFQSMPEGTWYCSSCND 530
>TAIR9_protein||AT2G36720.1 | Symbols: | PHD finger transcription factor,
putative | chr2:15393447-15399189 FORWARD
Length = 1008
Score = 91 bits (225), Expect = 9e-020
Identities = 38/90 (42%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
Frame = +3
Query: 6 AGMSARRQPYRHIYISNGLTLHDIATSLANGQNLTTGASDGSDDMCAVCGHDTGKMILCD 185
AG ++RR+PY +IY SNG++LH+ AT+ ++G+ +++ ++D+C +C D G ++LCD
Sbjct: 576 AGWASRRKPYFYIYTSNGVSLHEWATTFSHGRKY---SANDNNDLCVICA-DGGNLLLCD 631
Query: 186 GCPRAFHEACLNSEWIPESDWHCPNCRDNF 275
CPRAFH C++ IP +WHC C + F
Sbjct: 632 SCPRAFHIECVSLPSIPRGNWHCKYCENKF 661
>TAIR9_protein||AT1G05380.1 | Symbols: | DNA binding | chr1:1577231-1582190
FORWARD
Length = 1139
Score = 74 bits (180), Expect = 1e-014
Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = +3
Query: 78 ATSLANGQNLTTGASDGSDDMCAVCGHDTGKMILCDGCPRAFHEACLNSEWIPESDWHCP 257
AT+LA Q + T D +DD C +CG D G +I CDGCP +H+ CL + +P DWHCP
Sbjct: 608 ATNLALHQ-VDTDGDDPNDDACGICG-DGGDLICCDGCPSTYHQNCLGMQVLPSGDWHCP 665
Query: 258 NCRDNF 275
NC F
Sbjct: 666 NCTCKF 671
>TAIR9_protein||AT1G05380.2 | Symbols: | DNA binding | chr1:1577231-1582190
FORWARD
Length = 1139
Score = 74 bits (180), Expect = 1e-014
Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = +3
Query: 78 ATSLANGQNLTTGASDGSDDMCAVCGHDTGKMILCDGCPRAFHEACLNSEWIPESDWHCP 257
AT+LA Q + T D +DD C +CG D G +I CDGCP +H+ CL + +P DWHCP
Sbjct: 608 ATNLALHQ-VDTDGDDPNDDACGICG-DGGDLICCDGCPSTYHQNCLGMQVLPSGDWHCP 665
Query: 258 NCRDNF 275
NC F
Sbjct: 666 NCTCKF 671
>TAIR9_protein||AT5G36740.1 | Symbols: | PHD finger family protein |
chr5:14460790-14465727 FORWARD
Length = 1180
Score = 65 bits (156), Expect = 9e-012
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 114 GASDGSDDMCAVCGHDTGKMILCDGCPRAFHEACLNSEWIPESDWHCPNCRDNF 275
G+ D +DD C +CG D G +I CDGCP FH++CL+ + P W+C NC F
Sbjct: 644 GSGDPNDDTCGICG-DGGDLICCDGCPSTFHQSCLDIKKFPSGAWYCYNCSCKF 696
>TAIR9_protein||AT5G36670.1 | Symbols: | PHD finger family protein |
chr5:14401491-14406427 FORWARD
Length = 1194
Score = 65 bits (156), Expect = 9e-012
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 114 GASDGSDDMCAVCGHDTGKMILCDGCPRAFHEACLNSEWIPESDWHCPNCRDNF 275
G+ D +DD C +CG D G +I CDGCP FH++CL+ + P W+C NC F
Sbjct: 644 GSGDPNDDTCGICG-DGGDLICCDGCPSTFHQSCLDIKKFPSGAWYCYNCSCKF 696
>TAIR9_protein||AT5G58610.1 | Symbols: | PHD finger transcription factor,
putative | chr5:23686771-23691053 REVERSE
Length = 1066
Score = 62 bits (148), Expect = 8e-011
Identities = 25/45 (55%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +3
Query: 129 SDDMCAVCGHDTGKMILCDGCPRAFHEACLNSEWIPESDWHCPNC 263
+D C+VC H GK+ILCDGCP AFH CL E +P+ DW C +C
Sbjct: 693 NDVFCSVC-HYGGKLILCDGCPSAFHANCLGLEDVPDGDWFCQSC 736
>TAIR9_protein||AT5G35210.1 | Symbols: | peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2 protease
family protein | chr5:13474499-13482238 REVERSE
Length = 1577
Score = 60 bits (145), Expect = 2e-010
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +3
Query: 96 GQNLTTGASDGSDDMCAVCGHDTGKMILCDGCPRAFHEACLN--SEWIPESDWHCPNCRD 269
G N + DG+ D C +CG D G ++ CDGCP A+H C+ +IP+ W CP C
Sbjct: 399 GSNEVSSDLDGNSDECRICGMD-GTLLCCDGCPLAYHSRCIGVVKMYIPDGPWFCPECTI 457
Query: 270 N 272
N
Sbjct: 458 N 458
>TAIR9_protein||AT5G35210.2 | Symbols: | peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2 protease
family protein | chr5:13476213-13482238 REVERSE
Length = 1410
Score = 60 bits (145), Expect = 2e-010
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +3
Query: 96 GQNLTTGASDGSDDMCAVCGHDTGKMILCDGCPRAFHEACLN--SEWIPESDWHCPNCRD 269
G N + DG+ D C +CG D G ++ CDGCP A+H C+ +IP+ W CP C
Sbjct: 399 GSNEVSSDLDGNSDECRICGMD-GTLLCCDGCPLAYHSRCIGVVKMYIPDGPWFCPECTI 457
Query: 270 N 272
N
Sbjct: 458 N 458
>TAIR9_protein||AT5G63900.1 | Symbols: | PHD finger family protein |
chr5:25568698-25570371 FORWARD
Length = 558
Score = 58 bits (139), Expect = 8e-010
Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +3
Query: 123 DGSDDMCAVCGHDTGKMILCDGCPRAFHEACLNSEWIPESD-WHCPNC 263
D + D+C VC H G ++LCDGCP AFH ACL +PE D W CP C
Sbjct: 253 DMNCDVCCVC-HWGGDLLLCDGCPSAFHHACLGLSSLPEEDLWFCPCC 299
>TAIR9_protein||AT5G12400.1 | Symbols: | PHD finger transcription factor,
putative | chr5:4013813-4020909 FORWARD
Length = 1596
Score = 58 bits (138), Expect = 1e-009
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +3
Query: 63 TLHDIATSLANGQNLTTGASDGSDDMCAVCGHDTGKMILCDGCPRAFHEAC--LNSEWIP 236
T+ ++A + + + D + D C C D G ++ CDGCP A+H C L S +P
Sbjct: 585 TMMELADDFSLNNEVIDTSFDRNSDDCCFCKMD-GSLLCCDGCPAAYHSKCVGLASHLLP 643
Query: 237 ESDWHCPNC 263
E DW+CP C
Sbjct: 644 EGDWYCPEC 652
>TAIR9_protein||AT5G22760.1 | Symbols: | PHD finger family protein |
chr5:7571635-7577662 FORWARD
Length = 1567
Score = 56 bits (133), Expect = 4e-009
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +3
Query: 96 GQNLTTGASDGSDDMCAVCGHDTGKMILCDGCPRAFHEACLN--SEWIPESDWHCPNC 263
G N + D + D C +CG D G ++ CDGCP A+H C+ +IP+ W+CP C
Sbjct: 401 GPNGDSPDLDANSDECRLCGMD-GTLLCCDGCPLAYHSRCIGVVKMYIPDGPWYCPEC 457
>TAIR9_protein||AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP
binding / DNA binding / chromatin binding / helicase/ nucleic acid
binding / protein binding / zinc ion binding | chr5:18083659-18092162
REVERSE
Length = 2243
Score = 50 bits (118), Expect = 2e-007
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 120 SDGSDDMCAVCGHDTGKMILCDGCPRAFHEACLNS--EWIPESDWHCPNCRDN 272
+DG+ C +C G ++ CD CPR +H ACLN + IP W CP C N
Sbjct: 71 NDGNYFECVICDLG-GDLLCCDSCPRTYHTACLNPPLKRIPNGKWICPKCSPN 122
>TAIR9_protein||AT4G14920.1 | Symbols: | DNA binding / protein binding / zinc
ion binding | chr4:8531157-8535842 REVERSE
Length = 1111
Score = 50 bits (117), Expect = 3e-007
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 117 ASDGSDDMCAVCGHDTGKMILCDGCPRAFHEACLNSEWIPESDW 248
A D +DD C +CG D G ++ CDGCP FH+ CL+ DW
Sbjct: 647 ADDPNDDACGICG-DGGDLVCCDGCPSTFHQRCLDIRGHLMPDW 689
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,608,474,133
Number of Sequences: 33410
Number of Extensions: 2608474133
Number of Successful Extensions: 136120738
Number of sequences better than 0.0: 0
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