BLASTX 7.6.2
Query= RU15207 /QuerySize=270
(269 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 92 7e-020
TAIR9_protein||AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 92 7e-020
TAIR9_protein||AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 92 7e-020
TAIR9_protein||AT1G09140.1 | Symbols: | SF2/ASF-like splicing m... 89 4e-019
TAIR9_protein||AT1G09140.2 | Symbols: | SF2/ASF-like splicing m... 89 4e-019
TAIR9_protein||AT4G02430.2 | Symbols: | pre-mRNA splicing facto... 89 6e-019
TAIR9_protein||AT4G02430.1 | Symbols: | pre-mRNA splicing facto... 89 6e-019
TAIR9_protein||AT3G49430.1 | Symbols: SRp34a | SRp34a (Ser/Arg-r... 77 1e-015
TAIR9_protein||AT3G49430.2 | Symbols: SRp34a | SRp34a (Ser/Arg-r... 77 1e-015
TAIR9_protein||AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22 | SR... 45 6e-006
TAIR9_protein||AT4G31580.2 | Symbols: SRZ-22, SRZ22, RSZP22 | SR... 45 6e-006
TAIR9_protein||AT2G24590.1 | Symbols: | splicing factor, putati... 45 7e-006
TAIR9_protein||AT2G37340.3 | Symbols: RSZ33 | RSZ33; nucleic aci... 45 7e-006
TAIR9_protein||AT2G37340.1 | Symbols: RSZ33, ATRSZ33 | RSZ33; nu... 45 7e-006
TAIR9_protein||AT3G53500.1 | Symbols: RSZ32 | zinc knuckle (CCHC... 45 1e-005
TAIR9_protein||AT3G53500.2 | Symbols: RSZ32 | zinc knuckle (CCHC... 45 1e-005
>TAIR9_protein||AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-629583 FORWARD
Length = 304
Score = 92 bits (226), Expect = 7e-020
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = -3
Query: 261 IDLKVPPRPPGYAFVEFEDARDAEDAIRGRDGYDFDGNRLRVELA 127
IDLKVPPRPPGYAFVEF+DARDAEDAI GRDGYDFDG+RLRVELA
Sbjct: 36 IDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>TAIR9_protein||AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-628995 FORWARD
Length = 286
Score = 92 bits (226), Expect = 7e-020
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = -3
Query: 261 IDLKVPPRPPGYAFVEFEDARDAEDAIRGRDGYDFDGNRLRVELA 127
IDLKVPPRPPGYAFVEF+DARDAEDAI GRDGYDFDG+RLRVELA
Sbjct: 36 IDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>TAIR9_protein||AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-629583 FORWARD
Length = 304
Score = 92 bits (226), Expect = 7e-020
Identities = 42/45 (93%), Positives = 44/45 (97%)
Frame = -3
Query: 261 IDLKVPPRPPGYAFVEFEDARDAEDAIRGRDGYDFDGNRLRVELA 127
IDLKVPPRPPGYAFVEF+DARDAEDAI GRDGYDFDG+RLRVELA
Sbjct: 36 IDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELA 80
>TAIR9_protein||AT1G09140.1 | Symbols: | SF2/ASF-like splicing modulator
(SRP30) | chr1:2942887-2945818 REVERSE
Length = 269
Score = 89 bits (219), Expect = 4e-019
Identities = 47/87 (54%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Frame = -3
Query: 261 IDLKVPPRPPGYAFVEFEDARDAEDAIRGRDGYDFDGNRLRVELAXXXXXXXXXXXXXXX 82
IDLK+PPRPPGYAFVEFED RDA+DAI GRDGYDFDG RLRVE+A
Sbjct: 36 IDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIA-----HGGRRFSPSV 90
Query: 81 XXXXXXXXXXXXXXXXXXYRVLVSGLP 1
YRVLV+GLP
Sbjct: 91 DRYSSSYSASRAPSRRSDYRVLVTGLP 117
>TAIR9_protein||AT1G09140.2 | Symbols: | SF2/ASF-like splicing modulator
(SRP30) | chr1:2943528-2945818 REVERSE
Length = 257
Score = 89 bits (219), Expect = 4e-019
Identities = 47/87 (54%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Frame = -3
Query: 261 IDLKVPPRPPGYAFVEFEDARDAEDAIRGRDGYDFDGNRLRVELAXXXXXXXXXXXXXXX 82
IDLK+PPRPPGYAFVEFED RDA+DAI GRDGYDFDG RLRVE+A
Sbjct: 36 IDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIA-----HGGRRFSPSV 90
Query: 81 XXXXXXXXXXXXXXXXXXYRVLVSGLP 1
YRVLV+GLP
Sbjct: 91 DRYSSSYSASRAPSRRSDYRVLVTGLP 117
>TAIR9_protein||AT4G02430.2 | Symbols: | pre-mRNA splicing factor, putative /
SR1 protein, putative | chr4:1069186-1071313 FORWARD
Length = 279
Score = 89 bits (218), Expect = 6e-019
Identities = 40/45 (88%), Positives = 43/45 (95%)
Frame = -3
Query: 261 IDLKVPPRPPGYAFVEFEDARDAEDAIRGRDGYDFDGNRLRVELA 127
IDLK+PPRPPGYAFVEFEDARDA+DAI GRDGYDFDG+ LRVELA
Sbjct: 36 IDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
>TAIR9_protein||AT4G02430.1 | Symbols: | pre-mRNA splicing factor, putative /
SR1 protein, putative | chr4:1069186-1070543 FORWARD
Length = 179
Score = 89 bits (218), Expect = 6e-019
Identities = 40/45 (88%), Positives = 43/45 (95%)
Frame = -3
Query: 261 IDLKVPPRPPGYAFVEFEDARDAEDAIRGRDGYDFDGNRLRVELA 127
IDLK+PPRPPGYAFVEFEDARDA+DAI GRDGYDFDG+ LRVELA
Sbjct: 36 IDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELA 80
>TAIR9_protein||AT3G49430.1 | Symbols: SRp34a | SRp34a (Ser/Arg-rich protein
34a); RNA binding / nucleic acid binding / nucleotide binding |
chr3:18332668-18334829 FORWARD
Length = 301
Score = 77 bits (189), Expect = 1e-015
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = -3
Query: 261 IDLKVPPRPPGYAFVEFEDARDAEDAIRGRDGYDFDGNRLRVELA 127
I+LKVPPRPP Y FVEFE +RDAEDAI+GRDGY+ DG RLRVELA
Sbjct: 36 IELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGYNLDGCRLRVELA 80
>TAIR9_protein||AT3G49430.2 | Symbols: SRp34a | SRp34a (Ser/Arg-rich protein
34a); RNA binding / nucleic acid binding / nucleotide binding |
chr3:18332668-18334617 FORWARD
Length = 298
Score = 77 bits (189), Expect = 1e-015
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = -3
Query: 261 IDLKVPPRPPGYAFVEFEDARDAEDAIRGRDGYDFDGNRLRVELA 127
I+LKVPPRPP Y FVEFE +RDAEDAI+GRDGY+ DG RLRVELA
Sbjct: 36 IELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGYNLDGCRLRVELA 80
>TAIR9_protein||AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22 | SRZ-22; protein
binding | chr4:15306983-15308064 FORWARD
Length = 201
Score = 45 bits (106), Expect = 6e-006
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3
Query: 249 VPPRPPGYAFVEFEDARDAEDAIRGRDG 166
V RPPGYAF++FED RDA DAIR DG
Sbjct: 33 VARRPPGYAFLDFEDPRDARDAIRALDG 60
>TAIR9_protein||AT4G31580.2 | Symbols: SRZ-22, SRZ22, RSZP22 | SRZ-22; protein
binding | chr4:15306983-15308064 FORWARD
Length = 201
Score = 45 bits (106), Expect = 6e-006
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3
Query: 249 VPPRPPGYAFVEFEDARDAEDAIRGRDG 166
V RPPGYAF++FED RDA DAIR DG
Sbjct: 33 VARRPPGYAFLDFEDPRDARDAIRALDG 60
>TAIR9_protein||AT2G24590.1 | Symbols: | splicing factor, putative |
chr2:10449837-10450860 FORWARD
Length = 197
Score = 45 bits (105), Expect = 7e-006
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = -3
Query: 249 VPPRPPGYAFVEFEDARDAEDAIRGRDG 166
V RPPGYAF++FED+RDA DAIR DG
Sbjct: 33 VARRPPGYAFLDFEDSRDARDAIREVDG 60
>TAIR9_protein||AT2G37340.3 | Symbols: RSZ33 | RSZ33; nucleic acid binding /
nucleotide binding / zinc ion binding | chr2:15670372-15671584 REVERSE
Length = 250
Score = 45 bits (105), Expect = 7e-006
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = -3
Query: 228 YAFVEFEDARDAEDAIRGRDGYDFDGNRLRVELA 127
YAFVEF D RDA+DA DG DFDG+R+ VE +
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 38
>TAIR9_protein||AT2G37340.1 | Symbols: RSZ33, ATRSZ33 | RSZ33; nucleic acid
binding / nucleotide binding / zinc ion binding |
chr2:15670372-15672331 REVERSE
Length = 291
Score = 45 bits (105), Expect = 7e-006
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = -3
Query: 228 YAFVEFEDARDAEDAIRGRDGYDFDGNRLRVELA 127
YAFVEF D RDA+DA DG DFDG+R+ VE +
Sbjct: 46 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 79
>TAIR9_protein||AT3G53500.1 | Symbols: RSZ32 | zinc knuckle (CCHC-type) family
protein | chr3:19834557-19835896 REVERSE
Length = 244
Score = 45 bits (104), Expect = 1e-005
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = -3
Query: 228 YAFVEFEDARDAEDAIRGRDGYDFDGNRLRVE 133
YAFVEF D RDA+DA DG DFDG+R+ VE
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVE 36
>TAIR9_protein||AT3G53500.2 | Symbols: RSZ32 | zinc knuckle (CCHC-type) family
protein | chr3:19834557-19836507 REVERSE
Length = 285
Score = 45 bits (104), Expect = 1e-005
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = -3
Query: 228 YAFVEFEDARDAEDAIRGRDGYDFDGNRLRVE 133
YAFVEF D RDA+DA DG DFDG+R+ VE
Sbjct: 46 YAFVEFSDPRDADDARYYLDGRDFDGSRITVE 77
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,786,097,356
Number of Sequences: 33410
Number of Extensions: 2786097356
Number of Successful Extensions: 141287952
Number of sequences better than 0.0: 0
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