BLASTX 7.6.2
Query= RU15330 /QuerySize=545
(544 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G39040.1 | Symbols: | RNA binding | chr4:1818... 148 2e-036
TAIR9_protein||AT4G39040.2 | Symbols: | RNA binding | chr4:1818... 148 2e-036
TAIR9_protein||AT2G21350.1 | Symbols: | RNA binding | chr2:9136... 137 5e-033
>TAIR9_protein||AT4G39040.1 | Symbols: | RNA binding | chr4:18189249-18190535
REVERSE
Length = 297
Score = 148 bits (373), Expect = 2e-036
Identities = 75/113 (66%), Positives = 94/113 (83%)
Frame = -2
Query: 342 LTMREKKELASYANSLGKKLKSQLVGKSGVTANVAASFVENLESNELLKVKIHGTCPEEL 163
L+++EKKELASYA+SLG KLK QLVGKSGVT +V SF+E LE NELLKVKI T P+EL
Sbjct: 153 LSIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLKVKIRKTSPDEL 212
Query: 162 DDTVKQLEAATGSVVVGRIGRTVILYRPSLTKLKAEEKKEQMRKIFLKRKQRY 4
+D V+ LE ATGSV VG+IGRTVILYRPS TK+KAE KK+++ ++ + R+Q+Y
Sbjct: 213 EDAVQHLEEATGSVAVGQIGRTVILYRPSPTKMKAEAKKKEVERMSITRRQKY 265
>TAIR9_protein||AT4G39040.2 | Symbols: | RNA binding | chr4:18189292-18190535
REVERSE
Length = 281
Score = 148 bits (373), Expect = 2e-036
Identities = 75/113 (66%), Positives = 94/113 (83%)
Frame = -2
Query: 342 LTMREKKELASYANSLGKKLKSQLVGKSGVTANVAASFVENLESNELLKVKIHGTCPEEL 163
L+++EKKELASYA+SLG KLK QLVGKSGVT +V SF+E LE NELLKVKI T P+EL
Sbjct: 153 LSIKEKKELASYAHSLGDKLKCQLVGKSGVTDSVVFSFLETLEKNELLKVKIRKTSPDEL 212
Query: 162 DDTVKQLEAATGSVVVGRIGRTVILYRPSLTKLKAEEKKEQMRKIFLKRKQRY 4
+D V+ LE ATGSV VG+IGRTVILYRPS TK+KAE KK+++ ++ + R+Q+Y
Sbjct: 213 EDAVQHLEEATGSVAVGQIGRTVILYRPSPTKMKAEAKKKEVERMSITRRQKY 265
>TAIR9_protein||AT2G21350.1 | Symbols: | RNA binding | chr2:9136451-9137267
REVERSE
Length = 223
Score = 137 bits (344), Expect = 5e-033
Identities = 71/101 (70%), Positives = 84/101 (83%)
Frame = -2
Query: 342 LTMREKKELASYANSLGKKLKSQLVGKSGVTANVAASFVENLESNELLKVKIHGTCPEEL 163
L+ +EK++LASYA+ LG KLKSQLVGKSGVT +V SFVE LE NELLKVKIH TCP EL
Sbjct: 119 LSAKEKRKLASYAHHLGDKLKSQLVGKSGVTDSVVLSFVETLEKNELLKVKIHRTCPGEL 178
Query: 162 DDTVKQLEAATGSVVVGRIGRTVILYRPSLTKLKAEEKKEQ 40
+D + +LE ATGSV VG+I RTVILYRPS TKLKA+E K++
Sbjct: 179 EDMILRLEEATGSVSVGQIARTVILYRPSPTKLKADEDKKR 219
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,786,097,356
Number of Sequences: 33410
Number of Extensions: 2786097356
Number of Successful Extensions: 141287952
Number of sequences better than 0.0: 0
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