BLASTX 7.6.2
Query= RU17238 /QuerySize=392
(391 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G07360.1 | Symbols: | zinc finger (CCCH-type)... 247 2e-066
TAIR9_protein||AT2G29580.1 | Symbols: | zinc finger (CCCH-type)... 238 1e-063
TAIR9_protein||AT5G07060.1 | Symbols: | zinc finger (CCCH-type)... 197 2e-051
>TAIR9_protein||AT1G07360.1 | Symbols: | zinc finger (CCCH-type) family protein
/ RNA recognition motif (RRM)-containing protein | chr1:2260562-2262795
REVERSE
Length = 482
Score = 247 bits (629), Expect = 2e-066
Identities = 116/129 (89%), Positives = 123/129 (95%)
Frame = +2
Query: 2 DYGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKARAGIDYESSYGKARPNDTILK 181
+YGLPVQVRDTAL I + D+IPKSDVNRE+FAEEHDRKARAG+DYESS+GK RPNDTILK
Sbjct: 88 EYGLPVQVRDTALNISTHDSIPKSDVNREYFAEEHDRKARAGLDYESSFGKMRPNDTILK 147
Query: 182 LQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGELSQQNIKDRYYGVNDPVAM 361
LQRTTPYYKRNRAHVCSF+IRGECTRGAECPYRHEMP TGELSQQNIKDRYYGVNDPVAM
Sbjct: 148 LQRTTPYYKRNRAHVCSFFIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVAM 207
Query: 362 KLLNKAGEM 388
KLL KAGEM
Sbjct: 208 KLLGKAGEM 216
>TAIR9_protein||AT2G29580.1 | Symbols: | zinc finger (CCCH-type) family protein
/ RNA recognition motif (RRM)-containing protein |
chr2:12652011-12654158 FORWARD
Length = 484
Score = 238 bits (606), Expect = 1e-063
Identities = 111/129 (86%), Positives = 119/129 (92%)
Frame = +2
Query: 2 DYGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKARAGIDYESSYGKARPNDTILK 181
+YGLPVQVRDTAL I + D+IPKSDVNREFFAEEHDRK RAG+DYESS+GK RPNDTI
Sbjct: 88 EYGLPVQVRDTALNISTHDSIPKSDVNREFFAEEHDRKTRAGLDYESSFGKIRPNDTIRM 147
Query: 182 LQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGELSQQNIKDRYYGVNDPVAM 361
LQRTTPYYKRNRAH+CSF+IRGECTRG ECPYRHEMP TGELSQQNIKDRYYGVNDPVA+
Sbjct: 148 LQRTTPYYKRNRAHICSFFIRGECTRGDECPYRHEMPETGELSQQNIKDRYYGVNDPVAL 207
Query: 362 KLLNKAGEM 388
KLL KAGEM
Sbjct: 208 KLLGKAGEM 216
>TAIR9_protein||AT5G07060.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr5:2194394-2195872 REVERSE
Length = 364
Score = 197 bits (500), Expect = 2e-051
Identities = 92/128 (71%), Positives = 107/128 (83%)
Frame = +2
Query: 5 YGLPVQVRDTALAIGSDDAIPKSDVNREFFAEEHDRKARAGIDYESSYGKARPNDTILKL 184
+GLPVQVRD+AL I S ++P S VNRE+FA+EHD K RAG+DYESS+GK +PNDTILKL
Sbjct: 86 FGLPVQVRDSALNINSHYSVPMSHVNREYFADEHDPKTRAGLDYESSFGKMQPNDTILKL 145
Query: 185 QRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPITGELSQQNIKDRYYGVNDPVAMK 364
QR TP Y++NR +CSFY G+C RGAEC +RHEMP TGELS QNI+DRYY VNDPVAMK
Sbjct: 146 QRRTPSYEKNRPKICSFYTIGQCKRGAECSFRHEMPETGELSHQNIRDRYYSVNDPVAMK 205
Query: 365 LLNKAGEM 388
LL KAGEM
Sbjct: 206 LLRKAGEM 213
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,082,082,001
Number of Sequences: 33410
Number of Extensions: 3082082001
Number of Successful Extensions: 166265883
Number of sequences better than 0.0: 0
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