BLASTX 7.6.2
Query= RU19109 /QuerySize=435
(434 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G04240.1 | Symbols: ELF6 | ELF6 (EARLY FLOWERI... 193 5e-050
TAIR9_protein||AT3G48430.1 | Symbols: REF6 | REF6 (RELATIVE OF E... 174 3e-044
TAIR9_protein||AT4G06634.1 | Symbols: | zinc finger (C2H2 type)... 57 3e-009
TAIR9_protein||AT4G06634.2 | Symbols: | zinc finger (C2H2 type)... 57 3e-009
>TAIR9_protein||AT5G04240.1 | Symbols: ELF6 | ELF6 (EARLY FLOWERING 6);
transcription factor | chr5:1169544-1174638 FORWARD
Length = 1341
Score = 193 bits (489), Expect = 5e-050
Identities = 79/115 (68%), Positives = 94/115 (81%)
Frame = +2
Query: 11 PHSCNLGGCSMSFQTKEELMVHKRNRCPHEGCGKKFSCHKYAMVHSRVHDSARPFKCPWK 190
P+ C L GC M+F++K +L HKRNRC HEGCGKKF HKY ++H RVH RPF+C WK
Sbjct: 1227 PNRCYLEGCKMTFESKAKLQTHKRNRCTHEGCGKKFRAHKYLVLHQRVHKDERPFECSWK 1286
Query: 191 GCSMSFKWAWAQTEHIRVHTGEKPYKCKVDGCGLSFRLVSDFSRHRRKTGHYVS* 355
GCSM+FKW WA+TEH+R+HTGE+PY CKVDGCGLSFR VSD+SRHRRKT HYV+*
Sbjct: 1287 GCSMTFKWQWARTEHLRLHTGERPYICKVDGCGLSFRFVSDYSRHRRKTMHYVT* 1341
>TAIR9_protein||AT3G48430.1 | Symbols: REF6 | REF6 (RELATIVE OF EARLY FLOWERING
6); nucleic acid binding / transcription factor/ zinc ion binding |
chr3:17935609-17940456 FORWARD
Length = 1361
Score = 174 bits (439), Expect = 3e-044
Identities = 71/112 (63%), Positives = 87/112 (77%)
Frame = +2
Query: 14 HSCNLGGCSMSFQTKEELMVHKRNRCPHEGCGKKFSCHKYAMVHSRVHDSARPFKCPWKG 193
+ CN+ GC+MSF ++++LM+HKRN CP +GCGK F HKY + H RVH RP KCPWKG
Sbjct: 1243 YQCNMEGCTMSFSSEKQLMLHKRNICPIKGCGKNFFSHKYLVQHQRVHSDDRPLKCPWKG 1302
Query: 194 CSMSFKWAWAQTEHIRVHTGEKPYKCKVDGCGLSFRLVSDFSRHRRKTGHYV 349
C M+FKWAW++TEHIRVHTG +PY C CG +FR VSDFSRH+RKTGH V
Sbjct: 1303 CKMTFKWAWSRTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKRKTGHSV 1354
>TAIR9_protein||AT4G06634.1 | Symbols: | zinc finger (C2H2 type) family protein
| chr4:3764499-3766439 REVERSE
Length = 388
Score = 57 bits (137), Expect = 3e-009
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +2
Query: 89 CPHEGCGKKFSCHKYAMVHSRVHDSARPFKCPWKGCSMSFKWAWAQTEHIRVHTGEKPYK 268
C ++GCGK F HS +H R + C +GC F + H +HTGE+ Y
Sbjct: 81 CSYDGCGKTFFDVSALRKHSHIH-GERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYI 139
Query: 269 CKVDGCG----LSFRLVSDFSRHRRKTGH 343
C +GCG L F L S H ++ H
Sbjct: 140 CTYEGCGKAFSLDFNLRSHMKTHSQENYH 168
Score = 55 bits (131), Expect = 1e-008
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Frame = +2
Query: 20 CNLGGCSMSFQTKEELMVH------KRNRCPHEGCGKKFSCHKYAMVHSRVHDSARPFKC 181
C+ GC +F L H ++ C EGCGKKF H +H R + C
Sbjct: 81 CSYDGCGKTFFDVSALRKHSHIHGERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYIC 140
Query: 182 PWKGCSMSFKWAWAQTEHIRVHTGEKPYKCKVDGC----GLSFRLVSDFSRHRRKTG 340
++GC +F + H++ H+ E + C GC ++L + + + K G
Sbjct: 141 TYEGCGKAFSLDFNLRSHMKTHSQENYHICPYSGCVKRYAHEYKLKNHVAAYHEKNG 197
>TAIR9_protein||AT4G06634.2 | Symbols: | zinc finger (C2H2 type) family protein
| chr4:3764499-3766177 REVERSE
Length = 350
Score = 57 bits (137), Expect = 3e-009
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +2
Query: 89 CPHEGCGKKFSCHKYAMVHSRVHDSARPFKCPWKGCSMSFKWAWAQTEHIRVHTGEKPYK 268
C ++GCGK F HS +H R + C +GC F + H +HTGE+ Y
Sbjct: 43 CSYDGCGKTFFDVSALRKHSHIH-GERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYI 101
Query: 269 CKVDGCG----LSFRLVSDFSRHRRKTGH 343
C +GCG L F L S H ++ H
Sbjct: 102 CTYEGCGKAFSLDFNLRSHMKTHSQENYH 130
Score = 55 bits (131), Expect = 1e-008
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Frame = +2
Query: 20 CNLGGCSMSFQTKEELMVH------KRNRCPHEGCGKKFSCHKYAMVHSRVHDSARPFKC 181
C+ GC +F L H ++ C EGCGKKF H +H R + C
Sbjct: 43 CSYDGCGKTFFDVSALRKHSHIHGERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYIC 102
Query: 182 PWKGCSMSFKWAWAQTEHIRVHTGEKPYKCKVDGC----GLSFRLVSDFSRHRRKTG 340
++GC +F + H++ H+ E + C GC ++L + + + K G
Sbjct: 103 TYEGCGKAFSLDFNLRSHMKTHSQENYHICPYSGCVKRYAHEYKLKNHVAAYHEKNG 159
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,325,291,497
Number of Sequences: 33410
Number of Extensions: 3325291497
Number of Successful Extensions: 186310519
Number of sequences better than 0.0: 0
|