BLASTX 7.6.2
Query= RU19276 /QuerySize=572
(571 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G32583.1 | Symbols: | FUNCTIONS IN: molecular... 104 4e-023
TAIR9_protein||AT4G24972.1 | Symbols: TPD1 | TPD1 (TAPETUM DETER... 101 4e-022
>TAIR9_protein||AT1G32583.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match is: TPD1
(TAPETUM DETERMINANT 1) (TAIR:AT4G24972.1); Has 78 Blast hits to 76
proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:11787351-11788103 FORWARD
Length = 180
Score = 104 bits (259), Expect = 4e-023
Identities = 52/90 (57%), Positives = 65/90 (72%), Gaps = 2/90 (2%)
Frame = +1
Query: 298 NSKLAAAHRKLLVRGQENVEEPNRIWGEKCSRSDIVIEQGPTAPLPSGIPTYTVEIMNVC 477
N A RKLL+ + + NRI G+ CS+ DIV+ QG T PLPSG+P+YTVEI N C
Sbjct: 53 NENRTALSRKLLL-SPDIGDGTNRI-GQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSC 110
Query: 478 VTGCNISHIHLTCGWFSSATLVNPKVFRRL 567
V+ CNI+ IH++CGWFSS LVNP+VFRRL
Sbjct: 111 VSDCNIAEIHVSCGWFSSVRLVNPRVFRRL 140
>TAIR9_protein||AT4G24972.1 | Symbols: TPD1 | TPD1 (TAPETUM DETERMINANT 1) |
chr4:12838220-12839619 FORWARD
Length = 177
Score = 101 bits (250), Expect = 4e-022
Identities = 49/94 (52%), Positives = 64/94 (68%), Gaps = 6/94 (6%)
Frame = +1
Query: 301 SKLAAAHRKLLVRG-----QENVEEPNRIWGEKCSRSDIVIEQGPTAPLPSGIPTYTVEI 465
S + +HRK+L+ E EP RI GEKC +DIV+ Q T P+P+GIP Y VEI
Sbjct: 45 SSPSISHRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEI 103
Query: 466 MNVCVTGCNISHIHLTCGWFSSATLVNPKVFRRL 567
N C++GC IS IH+ CGWFSSA L+NP+VF+R+
Sbjct: 104 TNQCMSGCIISRIHINCGWFSSAKLINPRVFKRI 137
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,385,719,124
Number of Sequences: 33410
Number of Extensions: 3385719124
Number of Successful Extensions: 191716271
Number of sequences better than 0.0: 0
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