BLASTX 7.6.2
Query= RU19589 /QuerySize=753
(752 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 100 1e-021
TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 100 1e-021
TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 97 1e-020
TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 93 1e-019
TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 93 1e-019
TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 93 1e-019
TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 88 6e-018
TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 88 6e-018
TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 88 6e-018
TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 78 6e-015
TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 78 6e-015
TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 78 6e-015
TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 |... 62 3e-010
TAIR9_protein||AT4G23800.1 | Symbols: | high mobility group (HM... 52 5e-007
TAIR9_protein||AT4G11080.1 | Symbols: | high mobility group (HM... 50 2e-006
TAIR9_protein||AT5G23420.1 | Symbols: HMGB6 | HMGB6; transcripti... 49 4e-006
TAIR9_protein||AT2G34450.1 | Symbols: | high mobility group (HM... 48 5e-006
>TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181174 FORWARD
Length = 142
Score = 100 bits (247), Expect = 1e-021
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -2
Query: 490 KKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 320
K+EHP NKSVAAVGKAGGEKWKSLSD+EKAPY AKA+KRKVEY KNM YNKK EG
Sbjct: 54 KEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG 110
>TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181170 FORWARD
Length = 141
Score = 100 bits (247), Expect = 1e-021
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -2
Query: 490 KKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 320
K+EHP NKSVAAVGKAGGEKWKSLSD+EKAPY AKA+KRKVEY KNM YNKK EG
Sbjct: 54 KEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG 110
>TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181193 FORWARD
Length = 148
Score = 97 bits (239), Expect = 1e-020
Identities = 45/53 (84%), Positives = 48/53 (90%)
Frame = -2
Query: 490 KKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKK 332
K+EHP NKSVAAVGKAGGEKWKSLSD+EKAPY AKA+KRKVEY KNM YNKK
Sbjct: 54 KEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106
>TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 145
Score = 93 bits (230), Expect = 1e-019
Identities = 44/57 (77%), Positives = 48/57 (84%)
Frame = -2
Query: 490 KKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 320
KKE+P NKSVA VGKA G+KWKSLSD+EKAPY AKAEKRKVEY KN+ YNKK EG
Sbjct: 57 KKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG 113
Score = 51 bits (120), Expect = 8e-007
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 657 KGGKSRAAAPKRSDTKLXXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFREKSRRNT 478
KG KS+ + S + DPNKPKRPASAFFVFME+FRE ++
Sbjct: 2 KGAKSKTET-RSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 477 P 475
P
Sbjct: 61 P 61
>TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 143
Score = 93 bits (230), Expect = 1e-019
Identities = 44/57 (77%), Positives = 48/57 (84%)
Frame = -2
Query: 490 KKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 320
KKE+P NKSVA VGKA G+KWKSLSD+EKAPY AKAEKRKVEY KN+ YNKK EG
Sbjct: 57 KKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG 113
Score = 51 bits (120), Expect = 8e-007
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 657 KGGKSRAAAPKRSDTKLXXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFREKSRRNT 478
KG KS+ + S + DPNKPKRPASAFFVFME+FRE ++
Sbjct: 2 KGAKSKTET-RSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 477 P 475
P
Sbjct: 61 P 61
>TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 144
Score = 93 bits (230), Expect = 1e-019
Identities = 44/57 (77%), Positives = 48/57 (84%)
Frame = -2
Query: 490 KKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 320
KKE+P NKSVA VGKA G+KWKSLSD+EKAPY AKAEKRKVEY KN+ YNKK EG
Sbjct: 57 KKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG 113
Score = 51 bits (120), Expect = 8e-007
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 657 KGGKSRAAAPKRSDTKLXXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFREKSRRNT 478
KG KS+ + S + DPNKPKRPASAFFVFME+FRE ++
Sbjct: 2 KGAKSKTET-RSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 477 P 475
P
Sbjct: 61 P 61
>TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 88 bits (216), Expect = 6e-018
Identities = 40/59 (67%), Positives = 47/59 (79%)
Frame = -2
Query: 490 KKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEGDN 314
KKE+PN K+V+AVGKAGG+KWKS+S AEKAPY+ KA KRK EY K MD YNK EG +
Sbjct: 72 KKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSD 130
>TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 186
Score = 88 bits (216), Expect = 6e-018
Identities = 40/59 (67%), Positives = 47/59 (79%)
Frame = -2
Query: 490 KKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEGDN 314
KKE+PN K+V+AVGKAGG+KWKS+S AEKAPY+ KA KRK EY K MD YNK EG +
Sbjct: 72 KKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSD 130
>TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 88 bits (216), Expect = 6e-018
Identities = 40/59 (67%), Positives = 47/59 (79%)
Frame = -2
Query: 490 KKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEGDN 314
KKE+PN K+V+AVGKAGG+KWKS+S AEKAPY+ KA KRK EY K MD YNK EG +
Sbjct: 72 KKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSD 130
>TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 78 bits (190), Expect = 6e-015
Identities = 36/62 (58%), Positives = 44/62 (70%)
Frame = -2
Query: 499 REVKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 320
+E +PNNKSVA VGKA G +WK+++D +KAPY AKAE RK EY KN+ YN K A G
Sbjct: 51 KEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASG 110
Query: 319 DN 314
N
Sbjct: 111 TN 112
>TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 78 bits (190), Expect = 6e-015
Identities = 36/62 (58%), Positives = 44/62 (70%)
Frame = -2
Query: 499 REVKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 320
+E +PNNKSVA VGKA G +WK+++D +KAPY AKAE RK EY KN+ YN K A G
Sbjct: 51 KEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASG 110
Query: 319 DN 314
N
Sbjct: 111 TN 112
>TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 135
Score = 78 bits (190), Expect = 6e-015
Identities = 36/62 (58%), Positives = 44/62 (70%)
Frame = -2
Query: 499 REVKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 320
+E +PNNKSVA VGKA G +WK+++D +KAPY AKAE RK EY KN+ YN K A G
Sbjct: 51 KEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASG 110
Query: 319 DN 314
N
Sbjct: 111 TN 112
>TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 | HMGB5 (HIGH
MOBILITY GROUP B 5); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor |
chr4:16887363-16888184 REVERSE
Length = 126
Score = 62 bits (149), Expect = 3e-010
Identities = 26/61 (42%), Positives = 42/61 (68%)
Frame = -2
Query: 499 REVKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 320
+E +P+NKSV VG+A G+KWK++++ E+AP+ AK++ +K EY M YN + A G
Sbjct: 50 KEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNMELANG 109
Query: 319 D 317
+
Sbjct: 110 N 110
>TAIR9_protein||AT4G23800.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr4:12390228-12392516 FORWARD
Length = 457
Score = 52 bits (122), Expect = 5e-007
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = -2
Query: 472 NKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAE 323
NKSV V K GE+WK+LSD +KAPY+ A+K K Y + M+ Y + + E
Sbjct: 277 NKSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQAMEEYKRTKEE 326
>TAIR9_protein||AT4G11080.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr4:6760898-6763272 REVERSE
Length = 447
Score = 50 bits (117), Expect = 2e-006
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = -2
Query: 472 NKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAE 323
NKSV V K GE+WK+LS+ +KAPY A+K K Y + M+ Y + + E
Sbjct: 268 NKSVIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIYLQEMEGYKRTKEE 317
>TAIR9_protein||AT5G23420.1 | Symbols: HMGB6 | HMGB6; transcription factor |
chr5:7888712-7890111 REVERSE
Length = 242
Score = 49 bits (114), Expect = 4e-006
Identities = 24/61 (39%), Positives = 33/61 (54%)
Frame = -2
Query: 499 REVKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 320
R+ K N K GGEKWKSL++ EK Y KA + K EYNK+++ + + E
Sbjct: 130 RKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEEEE 189
Query: 319 D 317
D
Sbjct: 190 D 190
>TAIR9_protein||AT2G34450.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr2:14527918-14529448 REVERSE
Length = 152
Score = 48 bits (113), Expect = 5e-006
Identities = 20/60 (33%), Positives = 38/60 (63%)
Frame = -2
Query: 499 REVKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEG 320
++ ++E+P+ KS+ +GK GEKWK+++ EK Y A +++ E+++ M Y K+ G
Sbjct: 79 KQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYTKRMESG 138
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,444,325,396
Number of Sequences: 33410
Number of Extensions: 3444325396
Number of Successful Extensions: 191925846
Number of sequences better than 0.0: 0
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