BLASTX 7.6.2
Query= RU19718 /QuerySize=757
(756 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G21060.1 | Symbols: ATGRP2B | ATGRP2B (GLYCINE... 144 5e-035
TAIR9_protein||AT4G38680.1 | Symbols: GRP2, CSDP2, CSP2, ATCSP2 ... 143 2e-034
TAIR9_protein||AT2G17870.1 | Symbols: | cold-shock DNA-binding ... 101 9e-022
TAIR9_protein||AT4G36020.1 | Symbols: CSDP1 | CSDP1 (cold shock ... 95 5e-020
>TAIR9_protein||AT2G21060.1 | Symbols: ATGRP2B | ATGRP2B (GLYCINE-RICH PROTEIN
2B); DNA binding / nucleic acid binding / zinc ion binding |
chr2:9036983-9037588 REVERSE
Length = 202
Score = 144 bits (363), Expect = 5e-035
Identities = 79/201 (39%), Positives = 97/201 (48%), Gaps = 11/201 (5%)
Frame = +1
Query: 25 GFSDLSVRMSDRLTGTVKWFNDQKGFGFITPADGGEDLFVHQSSIRTEGFRTLGDGESVE 204
G D+++ DR GTVKWF+ QKGFGFITP+DGG+DLFVHQSSIR+EGFR+L ESVE
Sbjct: 3 GGGDVNMSGGDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVE 62
Query: 205 FQIETDNDGRTKAVDVTGPEEGPVQXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 375
F +E DN GR KA++V+GP+ PVQ
Sbjct: 63 FDVEVDNSGRPKAIEVSGPDGAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYG 122
Query: 376 XXXXXXXXXXXXXXNCFKCGEAGHMARDCSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 555
+CFKCGE GHMAR+CS+
Sbjct: 123 GRGSGGRGGGGGDNSCFKCGEPGHMARECSQ--------GGGGYSGGGGGGRYGSGGGGG 174
Query: 556 XXXXXXXCYQCGETGHFAREC 618
CY CGE+GHFAR+C
Sbjct: 175 GGGGGLSCYSCGESGHFARDC 195
>TAIR9_protein||AT4G38680.1 | Symbols: GRP2, CSDP2, CSP2, ATCSP2 | GRP2 (GLYCINE
RICH PROTEIN 2); double-stranded DNA binding / mRNA binding / nucleic
acid binding / single-stranded DNA binding | chr4:18072240-18072851
REVERSE
Length = 204
Score = 143 bits (359), Expect = 2e-034
Identities = 76/194 (39%), Positives = 94/194 (48%), Gaps = 2/194 (1%)
Frame = +1
Query: 55 DRLTGTVKWFNDQKGFGFITPADGGEDLFVHQSSIRTEGFRTLGDGESVEFQIETDNDGR 234
+R G+VKWF+ QKGFGFITP DGG+DLFVHQSSIR+EGFR+L E+VEF++E DN+ R
Sbjct: 9 ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68
Query: 235 TKAVDVTGPEEGPVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 414
KA+DV+GP+ PVQ
Sbjct: 69 PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRGG 128
Query: 415 XNCFKCGEAGHMARDCSE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCYQC 588
+C+KCGE GHMARDCSE CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 589 GETGHFARECPNRG 630
GE+GHFAR+C + G
Sbjct: 189 GESGHFARDCTSGG 202
>TAIR9_protein||AT2G17870.1 | Symbols: | cold-shock DNA-binding family protein
| chr2:7764276-7765181 REVERSE
Length = 302
Score = 101 bits (249), Expect = 9e-022
Identities = 53/138 (38%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Frame = +1
Query: 58 RLTGTVKWFNDQKGFGFITPADGGEDLFVHQSSIRTEGFRTLGDGESVEFQIETDNDGRT 237
R G V WF+D KG+GFITP DGGE+LFVHQSSI ++GFR+L GESVE++I +DG+T
Sbjct: 10 RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69
Query: 238 KAVDVTGPEEGPV-QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 414
KA++VT P G + +
Sbjct: 70 KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129
Query: 415 XNCFKCGEAGHMARDCSE 468
C+ CG+ GH ARDC +
Sbjct: 130 GECYMCGDVGHFARDCRQ 147
>TAIR9_protein||AT4G36020.1 | Symbols: CSDP1 | CSDP1 (cold shock domain protein
1); RNA binding / double-stranded DNA binding / nucleic acid binding /
single-stranded DNA binding | chr4:17043443-17044342 REVERSE
Length = 300
Score = 95 bits (234), Expect = 5e-020
Identities = 52/139 (37%), Positives = 67/139 (48%), Gaps = 3/139 (2%)
Frame = +1
Query: 58 RLTGTVKWFNDQKGFGFITPADGGEDLFVHQSSIRTEGFRTLGDGESVEFQIETDNDGRT 237
R TG V WFN KG+GFITP DG +LFVHQSSI +EG+R+L G++VEF I +DG+T
Sbjct: 10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69
Query: 238 KAVDVTGPEEGPVQXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXX 408
KAV+VT P G ++
Sbjct: 70 KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129
Query: 409 XXXNCFKCGEAGHMARDCS 465
C+ CG+ GH ARDC+
Sbjct: 130 GGEGCYNCGDTGHFARDCT 148
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,444,325,396
Number of Sequences: 33410
Number of Extensions: 3444325396
Number of Successful Extensions: 191925846
Number of sequences better than 0.0: 0
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