BLASTX 7.6.2
Query= RU20048 /QuerySize=884
(883 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G04630.1 | Symbols: NRPB6B, NRPE6B | NRPB6B; D... 206 2e-053
TAIR9_protein||AT5G51940.1 | Symbols: NRPB6A, NRPD6A, NRPE6A | N... 204 9e-053
>TAIR9_protein||AT2G04630.1 | Symbols: NRPB6B, NRPE6B | NRPB6B; DNA binding /
DNA-directed RNA polymerase | chr2:1619168-1620246 REVERSE
Length = 145
Score = 206 bits (522), Expect = 2e-053
Identities = 106/145 (73%), Positives = 116/145 (80%), Gaps = 3/145 (2%)
Frame = -2
Query: 681 MADDDYNEM-DIGYXXXXXXXXXXXXXXXXXD--NNDDLAGDAIETDDKEEQVPVERPRK 511
MADDDYNE+ D+GY D NDD+ D +ET+DK E PV+RPRK
Sbjct: 1 MADDDYNEVDDLGYEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRK 60
Query: 510 TSKFMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 331
TSKFMTKYERARILGTRA+QISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120
Query: 330 GSYEDWGVDELIVEDSWKRQVGGN* 256
SYE+WGVDELIVEDSWKRQVGG+*
Sbjct: 121 MSYEEWGVDELIVEDSWKRQVGGD* 145
>TAIR9_protein||AT5G51940.1 | Symbols: NRPB6A, NRPD6A, NRPE6A | NRPB6A; DNA
binding / DNA-directed RNA polymerase | chr5:21104679-21105796 FORWARD
Length = 145
Score = 204 bits (517), Expect = 9e-053
Identities = 103/145 (71%), Positives = 117/145 (80%), Gaps = 3/145 (2%)
Frame = -2
Query: 681 MADDDYNEM-DIGYXXXXXXXXXXXXXXXXXD--NNDDLAGDAIETDDKEEQVPVERPRK 511
MAD+DYN++ D+GY + NDD+ G+ IE +DK E PV+RPRK
Sbjct: 1 MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRK 60
Query: 510 TSKFMTKYERARILGTRAVQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 331
TSKFMTKYERARILGTRA+QISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120
Query: 330 GSYEDWGVDELIVEDSWKRQVGGN* 256
GS+E+WGVDELIVEDSWKRQVGG+*
Sbjct: 121 GSFEEWGVDELIVEDSWKRQVGGD* 145
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,473,905,105
Number of Sequences: 33410
Number of Extensions: 3473905105
Number of Successful Extensions: 191964334
Number of sequences better than 0.0: 0
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