BLASTX 7.6.2
Query= RU20411 /QuerySize=520
(519 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G75560.1 | Symbols: | zinc knuckle (CCHC-type... 225 2e-059
TAIR9_protein||AT1G75560.2 | Symbols: | zinc knuckle (CCHC-type... 225 2e-059
TAIR9_protein||AT4G36020.1 | Symbols: CSDP1 | CSDP1 (cold shock ... 77 4e-015
TAIR9_protein||AT3G42860.1 | Symbols: | zinc knuckle (CCHC-type... 67 6e-012
TAIR9_protein||AT3G43590.1 | Symbols: | zinc knuckle (CCHC-type... 54 4e-008
TAIR9_protein||AT3G53500.1 | Symbols: RSZ32 | zinc knuckle (CCHC... 47 6e-006
TAIR9_protein||AT3G53500.2 | Symbols: RSZ32 | zinc knuckle (CCHC... 47 6e-006
>TAIR9_protein||AT1G75560.1 | Symbols: | zinc knuckle (CCHC-type) family
protein | chr1:28371420-28372717 REVERSE
Length = 258
Score = 225 bits (572), Expect = 2e-059
Identities = 94/164 (57%), Positives = 116/164 (70%), Gaps = 7/164 (4%)
Frame = +2
Query: 29 CHNCGLPGHIASECTTKSLCWNCREPGHMASNCPNEGICHTCGKAGHRARDCTAAPMPPG 208
C+NCGLPGHIA+ECT +S CWNCREPGH+ASNC NEGICH+CGK+GHRARDC+ + G
Sbjct: 76 CNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSRAG 135
Query: 209 DLRLCNNCYKQGHIAVDCTNEKACNNCRKTGHLARDCPNEPICNMCNVSGHVARQCPRAN 388
DLRLCNNC+KQGH+A DCTN+KAC NCR +GH+ARDC N+P+CN+C++SGHVAR CP+ +
Sbjct: 136 DLRLCNNCFKQGHLAADCTNDKACKNCRTSGHIARDCRNDPVCNICSISGHVARHCPKGD 195
Query: 389 VLAEXXXXXXXXXXXXXXXXXXYNRD-------IVCRNCQQLGH 499
+RD I+C NC GH
Sbjct: 196 SNYSDRGSRVRDGGMQRGGLSRMSRDREGVSAMIICHNCGGRGH 239
Score = 102 bits (253), Expect = 2e-022
Identities = 49/125 (39%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Frame = +2
Query: 140 ICHTCGKAGHRARDCTAAPMPPGDLRLCNNCYKQGHIAVDCTNEKACNNCRKTGHLARDC 319
+C+ C + GH ARDC+ ++ +CNNC GHIA +CT E C NCR+ GH+A +C
Sbjct: 56 LCNNCKRPGHFARDCS-------NVSVCNNCGLPGHIAAECTAESRCWNCREPGHVASNC 108
Query: 320 PNEPICNMCNVSGHVARQCPRANVLAEXXXXXXXXXXXXXXXXXXYNRDIVCRNCQQLGH 499
NE IC+ C SGH AR C ++ A N D C+NC+ GH
Sbjct: 109 SNEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-DKACKNCRTSGH 167
Query: 500 MSRDC 514
++RDC
Sbjct: 168 IARDC 172
>TAIR9_protein||AT1G75560.2 | Symbols: | zinc knuckle (CCHC-type) family
protein | chr1:28371420-28372717 REVERSE
Length = 258
Score = 225 bits (572), Expect = 2e-059
Identities = 94/164 (57%), Positives = 116/164 (70%), Gaps = 7/164 (4%)
Frame = +2
Query: 29 CHNCGLPGHIASECTTKSLCWNCREPGHMASNCPNEGICHTCGKAGHRARDCTAAPMPPG 208
C+NCGLPGHIA+ECT +S CWNCREPGH+ASNC NEGICH+CGK+GHRARDC+ + G
Sbjct: 76 CNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSRAG 135
Query: 209 DLRLCNNCYKQGHIAVDCTNEKACNNCRKTGHLARDCPNEPICNMCNVSGHVARQCPRAN 388
DLRLCNNC+KQGH+A DCTN+KAC NCR +GH+ARDC N+P+CN+C++SGHVAR CP+ +
Sbjct: 136 DLRLCNNCFKQGHLAADCTNDKACKNCRTSGHIARDCRNDPVCNICSISGHVARHCPKGD 195
Query: 389 VLAEXXXXXXXXXXXXXXXXXXYNRD-------IVCRNCQQLGH 499
+RD I+C NC GH
Sbjct: 196 SNYSDRGSRVRDGGMQRGGLSRMSRDREGVSAMIICHNCGGRGH 239
Score = 102 bits (253), Expect = 2e-022
Identities = 49/125 (39%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Frame = +2
Query: 140 ICHTCGKAGHRARDCTAAPMPPGDLRLCNNCYKQGHIAVDCTNEKACNNCRKTGHLARDC 319
+C+ C + GH ARDC+ ++ +CNNC GHIA +CT E C NCR+ GH+A +C
Sbjct: 56 LCNNCKRPGHFARDCS-------NVSVCNNCGLPGHIAAECTAESRCWNCREPGHVASNC 108
Query: 320 PNEPICNMCNVSGHVARQCPRANVLAEXXXXXXXXXXXXXXXXXXYNRDIVCRNCQQLGH 499
NE IC+ C SGH AR C ++ A N D C+NC+ GH
Sbjct: 109 SNEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTN-DKACKNCRTSGH 167
Query: 500 MSRDC 514
++RDC
Sbjct: 168 IARDC 172
>TAIR9_protein||AT4G36020.1 | Symbols: CSDP1 | CSDP1 (cold shock domain protein
1); RNA binding / double-stranded DNA binding / nucleic acid binding /
single-stranded DNA binding | chr4:17043443-17044342 REVERSE
Length = 300
Score = 77 bits (189), Expect = 4e-015
Identities = 41/105 (39%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Frame = +2
Query: 29 CHNCGLPGHIASECTTKSLCWNCREPGHMASNCPNEGICHTCGKAGHRARDCTAAPMPPG 208
C+ CG GH A +CT K N R G G C++CG GH ARDC P
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGG------GGSGTCYSCGGVGHIARDCATKRQPS- 252
Query: 209 DLRLCNNCYKQGHIAVDCT--------NEKACNNCRKTGHLARDC 319
R C C GH+A DC N+ AC C K GH AR+C
Sbjct: 253 --RGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 75 bits (183), Expect = 2e-014
Identities = 47/124 (37%), Positives = 57/124 (45%), Gaps = 20/124 (16%)
Frame = +2
Query: 29 CHNCGLPGHIASECTTKSLCWNCREPGHMASNCPNEGICHTCGKAGHRARDCTAAPMPPG 208
C+NCG GH A +CT+ N + G A+ N+G C+TCG GH ARDCT + G
Sbjct: 134 CYNCGDTGHFARDCTSAG---NGDQRG--ATKGGNDG-CYTCGDVGHVARDCTQKSVGNG 187
Query: 209 DLR--------LCNNCYKQGHIAVDCTNEKACNNCRKTGHLARDCPNEPICNMCNVSGHV 364
D R C C GH A DCT + A N R G C C GH+
Sbjct: 188 DQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGG------GGSGTCYSCGGVGHI 241
Query: 365 ARQC 376
AR C
Sbjct: 242 ARDC 245
>TAIR9_protein||AT3G42860.1 | Symbols: | zinc knuckle (CCHC-type) family
protein | chr3:14946458-14948097 REVERSE
Length = 373
Score = 67 bits (162), Expect = 6e-012
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Frame = +2
Query: 29 CHNCGLPGHIASECTTKSLCWNCREPGHMASNCPNEGICHTCGKAGHRARDCTA----AP 196
C+ CG GH A +CT +S + G + S G C CGK GH +RDCTA
Sbjct: 239 CYKCGKEGHWARDCTVQS------DTGPVKSTSA-AGDCFKCGKPGHWSRDCTAQSGNPK 291
Query: 197 MPPGDLRL------CNNCYKQGHIAVDCTNEKACNNCRKTGHLARDCPNEPICNMCNVSG 358
PG ++ C C KQGH + DCT + + N ++G A+ + C C +G
Sbjct: 292 YEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSS-NQQFQSGQ-AKSTSSTGDCYKCGKAG 349
Query: 359 HVARQC 376
H +R C
Sbjct: 350 HWSRDC 355
Score = 49 bits (114), Expect = 2e-006
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +2
Query: 29 CHNCGLPGHIASECTTKSLCWNCREPGHMASNCPNEGICHTCGKAGHRARDCTA 190
C+ CG GH + +CT +S N + A + + G C+ CGKAGH +RDCT+
Sbjct: 306 CYKCGKQGHWSRDCTGQSS--NQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTS 357
>TAIR9_protein||AT3G43590.1 | Symbols: | zinc knuckle (CCHC-type) family
protein | chr3:15509753-15512255 FORWARD
Length = 552
Score = 54 bits (129), Expect = 4e-008
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +2
Query: 143 CHTCGKAGHRARDCTAAPMPPGDLRLCNNCYKQGHIAVDCTNEKACNNCRKTGHLARDCP 322
C++CG+ GH + +C P P + C C H A C+ C C+KTGH A+DCP
Sbjct: 168 CYSCGEQGHTSFNC---PTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRAKDCP 224
Query: 323 NE-------PICNMCNVSGH 361
++ +C C GH
Sbjct: 225 DKYKNGSKGAVCLRCGDFGH 244
Score = 52 bits (124), Expect = 1e-007
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Frame = +2
Query: 29 CHNCGLPGHIASECTT----KSLCWNCREPGHMASNCPNEGICHTCGKAGHRARDCTAAP 196
C++CG GH + C T + C+ C H A C C+ C K GHRA+DC
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRAKDCPDKY 227
Query: 197 MPPGDLRLCNNCYKQGHIAVDCTNE 271
+C C GH + C E
Sbjct: 228 KNGSKGAVCLRCGDFGHDMILCKYE 252
>TAIR9_protein||AT3G53500.1 | Symbols: RSZ32 | zinc knuckle (CCHC-type) family
protein | chr3:19834557-19835896 REVERSE
Length = 244
Score = 47 bits (110), Expect = 6e-006
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +2
Query: 128 PNEGICHTCGKAGHRARDCTAAPMPPGDLR-LCNNCYKQGHIAVDCTNEKACNNCRKTGH 304
P G C CG GH ARDCTA GD + C C ++GHI +C N + R+ G
Sbjct: 55 PGSGRCFNCGVDGHWARDCTA-----GDWKNKCYRCGERGHIERNCKNSPSPKKARQGGS 109
Query: 305 LAR 313
+R
Sbjct: 110 YSR 112
>TAIR9_protein||AT3G53500.2 | Symbols: RSZ32 | zinc knuckle (CCHC-type) family
protein | chr3:19834557-19836507 REVERSE
Length = 285
Score = 47 bits (110), Expect = 6e-006
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +2
Query: 128 PNEGICHTCGKAGHRARDCTAAPMPPGDLR-LCNNCYKQGHIAVDCTNEKACNNCRKTGH 304
P G C CG GH ARDCTA GD + C C ++GHI +C N + R+ G
Sbjct: 96 PGSGRCFNCGVDGHWARDCTA-----GDWKNKCYRCGERGHIERNCKNSPSPKKARQGGS 150
Query: 305 LAR 313
+R
Sbjct: 151 YSR 153
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,532,527,449
Number of Sequences: 33410
Number of Extensions: 3532527449
Number of Successful Extensions: 192026384
Number of sequences better than 0.0: 0
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