BLASTX 7.6.2
Query= RU20604 /QuerySize=748
(747 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G20180.1 | Symbols: | ribosomal protein L36 f... 121 8e-028
TAIR9_protein||AT5G20180.2 | Symbols: | ribosomal protein L36 f... 121 8e-028
TAIR9_protein||ATCG00760.1 | Symbols: RPL36 | encodes a chloropl... 57 1e-008
>TAIR9_protein||AT5G20180.1 | Symbols: | ribosomal protein L36 family protein |
chr5:6811312-6811910 FORWARD
Length = 104
Score = 121 bits (301), Expect = 8e-028
Identities = 62/107 (57%), Positives = 79/107 (73%), Gaps = 5/107 (4%)
Frame = +2
Query: 116 MKVRSSVKKMCEFCKTIKRRGRVYVYCTANPKHKQRQGMSTFAYQG-TDAPMSAETSITK 292
MKVRSSVKKMCEFCKT+KRRGRVYV C++NPKHKQRQG S+FAY+G T +P+ AE ++
Sbjct: 1 MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60
Query: 293 QENNF-GQSSHVGLASLIPRKNEPSMPSPTLGWRVGLASLLFRKAN* 430
+ GQ GLASL+ ++ MP+ GWR GLAS+LF++ N*
Sbjct: 61 ELVRLPGQGVSAGLASLLHKR---PMPTAYFGWRSGLASILFKQGN* 104
>TAIR9_protein||AT5G20180.2 | Symbols: | ribosomal protein L36 family protein |
chr5:6811312-6811910 FORWARD
Length = 104
Score = 121 bits (301), Expect = 8e-028
Identities = 62/107 (57%), Positives = 79/107 (73%), Gaps = 5/107 (4%)
Frame = +2
Query: 116 MKVRSSVKKMCEFCKTIKRRGRVYVYCTANPKHKQRQGMSTFAYQG-TDAPMSAETSITK 292
MKVRSSVKKMCEFCKT+KRRGRVYV C++NPKHKQRQG S+FAY+G T +P+ AE ++
Sbjct: 1 MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60
Query: 293 QENNF-GQSSHVGLASLIPRKNEPSMPSPTLGWRVGLASLLFRKAN* 430
+ GQ GLASL+ ++ MP+ GWR GLAS+LF++ N*
Sbjct: 61 ELVRLPGQGVSAGLASLLHKR---PMPTAYFGWRSGLASILFKQGN* 104
>TAIR9_protein||ATCG00760.1 | Symbols: RPL36 | encodes a chloroplast ribosomal
protein L36, a constituent of the large subunit of the ribosomal
complex | chrC:79489-79602 REVERSE
Length = 38
Score = 57 bits (135), Expect = 1e-008
Identities = 24/38 (63%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
Frame = +2
Query: 116 MKVRSSVKKMCEFCKTIKRRGRVYVYCTANPKHKQRQG 229
MK+R+SV+K+CE C+ I+RRGR+ V C +NP+HKQRQG
Sbjct: 1 MKIRASVRKICEKCRLIRRRGRIIVIC-SNPRHKQRQG 37
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,590,698,424
Number of Sequences: 33410
Number of Extensions: 3590698424
Number of Successful Extensions: 197135522
Number of sequences better than 0.0: 0
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