BLASTX 7.6.2
Query= RU20620 /QuerySize=179
(178 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G10200.1 | Symbols: WLIM1 | WLIM1; transcripti... 85 7e-018
TAIR9_protein||AT3G61230.1 | Symbols: | LIM domain-containing p... 67 2e-012
TAIR9_protein||AT3G55770.1 | Symbols: | LIM domain-containing p... 66 3e-012
TAIR9_protein||AT3G55770.2 | Symbols: | LIM domain-containing p... 66 3e-012
TAIR9_protein||AT3G55770.3 | Symbols: | LIM domain-containing p... 66 3e-012
TAIR9_protein||AT3G55770.4 | Symbols: | LIM domain-containing p... 66 3e-012
TAIR9_protein||AT3G55770.5 | Symbols: | LIM domain-containing p... 66 3e-012
TAIR9_protein||AT3G55770.6 | Symbols: | LIM domain-containing p... 66 3e-012
TAIR9_protein||AT2G39900.1 | Symbols: | LIM domain-containing p... 66 4e-012
TAIR9_protein||AT2G45800.1 | Symbols: | LIM domain-containing p... 65 6e-012
TAIR9_protein||AT1G01780.1 | Symbols: | LIM domain-containing p... 61 1e-010
TAIR9_protein||AT2G45800.2 | Symbols: | LIM domain-containing p... 52 7e-008
>TAIR9_protein||AT1G10200.1 | Symbols: WLIM1 | WLIM1; transcription factor/ zinc
ion binding | chr1:3346677-3347763 REVERSE
Length = 191
Score = 85 bits (209), Expect = 7e-018
Identities = 35/39 (89%), Positives = 38/39 (97%)
Frame = +3
Query: 60 FAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCK 176
FAGTTQKC AC+KTVYLVD+LTADN+VYHKACFRCHHCK
Sbjct: 3 FAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCK 41
Score = 51 bits (121), Expect = 1e-007
Identities = 17/37 (45%), Positives = 28/37 (75%)
Frame = +3
Query: 60 FAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHH 170
F GT +KC C+KTVY +++++ + +YHK+CF+C H
Sbjct: 103 FGGTREKCVGCDKTVYPIEKVSVNGTLYHKSCFKCTH 139
>TAIR9_protein||AT3G61230.1 | Symbols: | LIM domain-containing protein |
chr3:22664601-22665503 REVERSE
Length = 214
Score = 67 bits (163), Expect = 2e-012
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +3
Query: 51 MATFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHC 173
MA F GTT KCKAC+KTVY++D +T + YHK+CFRC HC
Sbjct: 1 MAAFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHC 41
Score = 54 bits (129), Expect = 1e-008
Identities = 21/42 (50%), Positives = 30/42 (71%)
Frame = +3
Query: 45 RRMATFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHH 170
R + F+GT KC AC+KTVY ++++T + + YHK CFRC H
Sbjct: 95 RLSSFFSGTQDKCAACKKTVYPLEKMTMEGESYHKTCFRCAH 136
>TAIR9_protein||AT3G55770.1 | Symbols: | LIM domain-containing protein |
chr3:20703799-20705115 FORWARD
Length = 200
Score = 66 bits (160), Expect = 3e-012
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +3
Query: 57 TFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCK 176
+F GT QKCKACEKTVY V+ L+AD YHK+CF+C HCK
Sbjct: 2 SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCK 41
Score = 54 bits (129), Expect = 1e-008
Identities = 18/37 (48%), Positives = 29/37 (78%)
Frame = +3
Query: 60 FAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHH 170
F+GT +KC C KTVY ++++T +++ YHK+CF+C H
Sbjct: 101 FSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSH 137
>TAIR9_protein||AT3G55770.2 | Symbols: | LIM domain-containing protein |
chr3:20703799-20705115 FORWARD
Length = 200
Score = 66 bits (160), Expect = 3e-012
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +3
Query: 57 TFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCK 176
+F GT QKCKACEKTVY V+ L+AD YHK+CF+C HCK
Sbjct: 2 SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCK 41
Score = 54 bits (129), Expect = 1e-008
Identities = 18/37 (48%), Positives = 29/37 (78%)
Frame = +3
Query: 60 FAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHH 170
F+GT +KC C KTVY ++++T +++ YHK+CF+C H
Sbjct: 101 FSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSH 137
>TAIR9_protein||AT3G55770.3 | Symbols: | LIM domain-containing protein |
chr3:20703799-20705115 FORWARD
Length = 200
Score = 66 bits (160), Expect = 3e-012
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +3
Query: 57 TFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCK 176
+F GT QKCKACEKTVY V+ L+AD YHK+CF+C HCK
Sbjct: 2 SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCK 41
Score = 54 bits (129), Expect = 1e-008
Identities = 18/37 (48%), Positives = 29/37 (78%)
Frame = +3
Query: 60 FAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHH 170
F+GT +KC C KTVY ++++T +++ YHK+CF+C H
Sbjct: 101 FSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSH 137
>TAIR9_protein||AT3G55770.4 | Symbols: | LIM domain-containing protein |
chr3:20703799-20705115 FORWARD
Length = 200
Score = 66 bits (160), Expect = 3e-012
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +3
Query: 57 TFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCK 176
+F GT QKCKACEKTVY V+ L+AD YHK+CF+C HCK
Sbjct: 2 SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCK 41
Score = 54 bits (129), Expect = 1e-008
Identities = 18/37 (48%), Positives = 29/37 (78%)
Frame = +3
Query: 60 FAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHH 170
F+GT +KC C KTVY ++++T +++ YHK+CF+C H
Sbjct: 101 FSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSH 137
>TAIR9_protein||AT3G55770.5 | Symbols: | LIM domain-containing protein |
chr3:20703799-20705115 FORWARD
Length = 200
Score = 66 bits (160), Expect = 3e-012
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +3
Query: 57 TFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCK 176
+F GT QKCKACEKTVY V+ L+AD YHK+CF+C HCK
Sbjct: 2 SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCK 41
Score = 54 bits (129), Expect = 1e-008
Identities = 18/37 (48%), Positives = 29/37 (78%)
Frame = +3
Query: 60 FAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHH 170
F+GT +KC C KTVY ++++T +++ YHK+CF+C H
Sbjct: 101 FSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSH 137
>TAIR9_protein||AT3G55770.6 | Symbols: | LIM domain-containing protein |
chr3:20703799-20704614 FORWARD
Length = 128
Score = 66 bits (160), Expect = 3e-012
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +3
Query: 57 TFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCK 176
+F GT QKCKACEKTVY V+ L+AD YHK+CF+C HCK
Sbjct: 2 SFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCK 41
>TAIR9_protein||AT2G39900.1 | Symbols: | LIM domain-containing protein |
chr2:16659136-16660267 FORWARD
Length = 201
Score = 66 bits (159), Expect = 4e-012
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +3
Query: 57 TFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCK 176
+F GT QKC+ACEKTVY V+ L+AD YHKACF+C HCK
Sbjct: 2 SFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCK 41
Score = 53 bits (126), Expect = 3e-008
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +3
Query: 45 RRMATFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHH 170
R F+GT KC C KTVY ++++T +++ YHK+CF+C H
Sbjct: 97 RLAGMFSGTQDKCATCTKTVYPIEKVTVESQCYHKSCFKCSH 138
>TAIR9_protein||AT2G45800.1 | Symbols: | LIM domain-containing protein |
chr2:18858153-18859007 REVERSE
Length = 227
Score = 65 bits (158), Expect = 6e-012
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = +3
Query: 57 TFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCK 176
+F GT KCKAC+KTVY++D LT + YHK+CFRC HCK
Sbjct: 2 SFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCK 41
Score = 52 bits (123), Expect = 7e-008
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = +3
Query: 60 FAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHH 170
F+GT KC C+KTVY ++++T + + YHK CFRC H
Sbjct: 99 FSGTQDKCATCKKTVYPLEKVTMEGESYHKTCFRCTH 135
>TAIR9_protein||AT1G01780.1 | Symbols: | LIM domain-containing protein |
chr1:282919-284082 FORWARD
Length = 206
Score = 61 bits (147), Expect = 1e-010
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +3
Query: 57 TFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCK 176
+F GT KC C+KTVY+VD L+ + YHK+CFRC HCK
Sbjct: 2 SFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCK 41
Score = 52 bits (122), Expect = 9e-008
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +3
Query: 60 FAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHH 170
F GT KC ACEKTVY ++++ + + +HK CFRC H
Sbjct: 97 FCGTQDKCAACEKTVYPLEKIQMEGECFHKTCFRCAH 133
>TAIR9_protein||AT2G45800.2 | Symbols: | LIM domain-containing protein |
chr2:18858153-18858823 REVERSE
Length = 196
Score = 52 bits (123), Expect = 7e-008
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = +3
Query: 60 FAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHH 170
F+GT KC C+KTVY ++++T + + YHK CFRC H
Sbjct: 68 FSGTQDKCATCKKTVYPLEKVTMEGESYHKTCFRCTH 104
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,590,698,424
Number of Sequences: 33410
Number of Extensions: 3590698424
Number of Successful Extensions: 197135522
Number of sequences better than 0.0: 0
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