BLASTX 7.6.2
Query= RU21821 /QuerySize=580
(579 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G56140.1 | Symbols: | KH domain-containing pr... 151 5e-037
TAIR9_protein||AT4G26480.1 | Symbols: | KH domain-containing pr... 143 1e-034
TAIR9_protein||AT1G09660.1 | Symbols: | KH domain-containing qu... 82 2e-016
TAIR9_protein||AT1G09660.2 | Symbols: | KH domain-containing qu... 82 2e-016
TAIR9_protein||AT2G38610.1 | Symbols: | KH domain-containing pr... 73 1e-013
TAIR9_protein||AT2G38610.2 | Symbols: | KH domain-containing pr... 73 1e-013
TAIR9_protein||AT3G08620.1 | Symbols: | KH domain-containing pr... 70 1e-012
>TAIR9_protein||AT5G56140.1 | Symbols: | KH domain-containing protein |
chr5:22725462-22727932 FORWARD
Length = 316
Score = 151 bits (379), Expect = 5e-037
Identities = 85/148 (57%), Positives = 93/148 (62%), Gaps = 4/148 (2%)
Frame = +2
Query: 140 GVGGRYMAYXXXXXX--XXXXXXXXXXXXXXXXXXXXEQEKYLSELFGERQKLGPFLPVL 313
G GGR+M Y EQEKYLSEL ER KL PFLPVL
Sbjct: 24 GGGGRFMTYSSSLSVPPSAPQSPNYSGGLRSQSSVFVEQEKYLSELLAERHKLTPFLPVL 83
Query: 314 PNCCRLLNQEILRVTTLLGNASVLGQSGLEHASPLASGGMFSNGGADMNGWASRFQSEMS 493
P+ RLLNQEILRVTTLL NA+VL QSGL+H SPLASGG+F N ADMNGWAS+F SE S
Sbjct: 84 PHAFRLLNQEILRVTTLLENATVLSQSGLDHPSPLASGGIFQNARADMNGWASQFPSERS 143
Query: 494 SLLQPSSTQNWLSPQSSSSGLIVKRTIR 577
+ S NWL+ SSSGLI KRTIR
Sbjct: 144 --VPSSPGPNWLNSPGSSSGLIAKRTIR 169
>TAIR9_protein||AT4G26480.1 | Symbols: | KH domain-containing protein |
chr4:13372885-13378390 REVERSE
Length = 556
Score = 143 bits (359), Expect = 1e-034
Identities = 77/111 (69%), Positives = 84/111 (75%), Gaps = 4/111 (3%)
Frame = +2
Query: 245 EQEKYLSELFGERQKLGPFLPVLPNCCRLLNQEILRVTTLLGNASVLGQSGLEHASPLAS 424
EQEKYLSEL ER KL PFLPVLP+ CRL+NQEILRVTTLL NA L QS +H SPLAS
Sbjct: 304 EQEKYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLLENA--LSQSRFDHPSPLAS 361
Query: 425 GGMFSNGGADMNGWASRFQSEMSSLLQPSSTQNWLSPQSSSSGLIVKRTIR 577
GG+F N ADMNGWAS+F SE S + S NWL+ SSSGLIVKRTIR
Sbjct: 362 GGIFQNSRADMNGWASQFPSERS--VSSSPAPNWLNSPGSSSGLIVKRTIR 410
>TAIR9_protein||AT1G09660.1 | Symbols: | KH domain-containing quaking protein,
putative | chr1:3128032-3130791 REVERSE
Length = 299
Score = 82 bits (201), Expect = 2e-016
Identities = 51/117 (43%), Positives = 65/117 (55%), Gaps = 13/117 (11%)
Frame = +2
Query: 245 EQEKYLSELFGERQKLGPFLPVLPNCCRLLNQEILRVTTLLGNASVLGQSGLEHASPLAS 424
++E+YL+EL ERQKLGPFL V+PNCCRLLN EI RV +S EH SP S
Sbjct: 41 DRERYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRV------SSFPDLDRYEHGSPFRS 94
Query: 425 GGMFSNGGADMNGWASRFQSEMSSLLQPS------STQNWLSPQSSSSGLIVKRTIR 577
G +NG D+ GW S Q+E + LQ + S W+ + IVK+ IR
Sbjct: 95 LGQPTNGKLDLEGW-SMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIR 150
>TAIR9_protein||AT1G09660.2 | Symbols: | KH domain-containing quaking protein,
putative | chr1:3128205-3130791 REVERSE
Length = 265
Score = 82 bits (201), Expect = 2e-016
Identities = 51/117 (43%), Positives = 65/117 (55%), Gaps = 13/117 (11%)
Frame = +2
Query: 245 EQEKYLSELFGERQKLGPFLPVLPNCCRLLNQEILRVTTLLGNASVLGQSGLEHASPLAS 424
++E+YL+EL ERQKLGPFL V+PNCCRLLN EI RV +S EH SP S
Sbjct: 41 DRERYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRV------SSFPDLDRYEHGSPFRS 94
Query: 425 GGMFSNGGADMNGWASRFQSEMSSLLQPS------STQNWLSPQSSSSGLIVKRTIR 577
G +NG D+ GW S Q+E + LQ + S W+ + IVK+ IR
Sbjct: 95 LGQPTNGKLDLEGW-SMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIR 150
>TAIR9_protein||AT2G38610.1 | Symbols: | KH domain-containing protein |
chr2:16147552-16149638 REVERSE
Length = 287
Score = 73 bits (178), Expect = 1e-013
Identities = 43/113 (38%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Frame = +2
Query: 245 EQEKYLSELFGERQKLGPFLPVLPNCCRLLNQEILRVTTLLGNASVLGQSGLEH--ASPL 418
+ +YL+EL E QKL PF+ VLP C RLLNQE+ RV+ ++ N L H SP+
Sbjct: 28 DSSQYLTELLAEHQKLTPFMQVLPICSRLLNQEMFRVSGMMSNQGFGDFDRLRHRSPSPM 87
Query: 419 ASGGMFSN-GGADMNGWASRFQSEMSSLLQPSSTQNWLSPQSSSSGLIVKRTI 574
AS + SN + GW Q +S P T +W S S VKR +
Sbjct: 88 ASSNLMSNVSNTGLGGWNGLSQERLSG--TPGMTMDWQGAPGSPSSYTVKRIL 138
>TAIR9_protein||AT2G38610.2 | Symbols: | KH domain-containing protein |
chr2:16147552-16149638 REVERSE
Length = 287
Score = 73 bits (178), Expect = 1e-013
Identities = 43/113 (38%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Frame = +2
Query: 245 EQEKYLSELFGERQKLGPFLPVLPNCCRLLNQEILRVTTLLGNASVLGQSGLEH--ASPL 418
+ +YL+EL E QKL PF+ VLP C RLLNQE+ RV+ ++ N L H SP+
Sbjct: 28 DSSQYLTELLAEHQKLTPFMQVLPICSRLLNQEMFRVSGMMSNQGFGDFDRLRHRSPSPM 87
Query: 419 ASGGMFSN-GGADMNGWASRFQSEMSSLLQPSSTQNWLSPQSSSSGLIVKRTI 574
AS + SN + GW Q +S P T +W S S VKR +
Sbjct: 88 ASSNLMSNVSNTGLGGWNGLSQERLSG--TPGMTMDWQGAPGSPSSYTVKRIL 138
>TAIR9_protein||AT3G08620.1 | Symbols: | KH domain-containing protein |
chr3:2617925-2620314 FORWARD
Length = 284
Score = 70 bits (169), Expect = 1e-012
Identities = 42/111 (37%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Frame = +2
Query: 254 KYLSELFGERQKLGPFLPVLPNCCRLLNQEILRVTTLLGNASVLGQSGLEH--ASPLASG 427
+Y+S+L E QKLGPF+ VLP C RLLNQEI R+T ++ N L H SP+AS
Sbjct: 30 QYISQLLAEHQKLGPFMQVLPICSRLLNQEIFRITGMMPNQGFTDFDRLRHRSPSPMASP 89
Query: 428 GMFSN-GGADMNGWASRFQSEMSSLLQPSSTQNWLSPQSSSSGLIVKRTIR 577
+ SN G + GW + W +S S VKR +R
Sbjct: 90 NLMSNVSGGGLGGWNGLPPERIGG--PHGMAMEWQGAPASPSSYPVKRILR 138
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,766,027,575
Number of Sequences: 33410
Number of Extensions: 3766027575
Number of Successful Extensions: 212025957
Number of sequences better than 0.0: 0
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