BLASTX 7.6.2
Query= RU22002 /QuerySize=306
(305 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G02830.1 | Symbols: ZFN1 | ZFN1 (ZINC FINGER P... 167 1e-042
TAIR9_protein||AT5G16540.2 | Symbols: ZFN3 | ZFN3 (ZINC FINGER N... 163 3e-041
TAIR9_protein||AT5G16540.3 | Symbols: ZFN3 | ZFN3 (ZINC FINGER N... 163 3e-041
TAIR9_protein||AT5G16540.1 | Symbols: ZFN3 | ZFN3 (ZINC FINGER N... 163 3e-041
TAIR9_protein||AT2G47850.1 | Symbols: | zinc finger (CCCH-type)... 138 8e-034
TAIR9_protein||AT2G47850.3 | Symbols: | zinc finger (CCCH-type)... 138 8e-034
TAIR9_protein||AT5G18550.1 | Symbols: | nucleic acid binding / ... 124 9e-030
TAIR9_protein||AT3G06410.1 | Symbols: | nucleic acid binding / ... 124 1e-029
TAIR9_protein||AT1G04990.2 | Symbols: | zinc finger (CCCH-type)... 121 1e-028
TAIR9_protein||AT1G04990.1 | Symbols: | zinc finger (CCCH-type)... 121 1e-028
TAIR9_protein||AT2G47850.2 | Symbols: | zinc finger (CCCH-type)... 114 1e-026
TAIR9_protein||AT3G48440.1 | Symbols: | zinc finger (CCCH-type)... 105 8e-024
TAIR9_protein||AT2G32930.1 | Symbols: ZFN2 | ZFN2 (ZINC FINGER N... 104 1e-023
TAIR9_protein||AT3G12680.1 | Symbols: HUA1 | HUA1 (ENHANCER OF A... 104 2e-023
TAIR9_protein||AT5G63260.1 | Symbols: | zinc finger (CCCH-type)... 92 5e-020
>TAIR9_protein||AT3G02830.1 | Symbols: ZFN1 | ZFN1 (ZINC FINGER PROTEIN 1); DNA
binding / nuclease/ nucleic acid binding | chr3:614075-615916 FORWARD
Length = 398
Score = 167 bits (422), Expect = 1e-042
Identities = 73/94 (77%), Positives = 82/94 (87%), Gaps = 2/94 (2%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
+PERIGQPEC+YYLKTGTCKFG TCKFHHPR+KAGIAGRV+LN+LGYPLR NE++CAY+L
Sbjct: 82 YPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFL 141
Query: 183 RTGQCKFASTCKFHH--PQPTNMMVSLSGSPVYP 278
RTG CKF TCKF+H PQPTNMMV SG YP
Sbjct: 142 RTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYP 175
Score = 107 bits (265), Expect = 2e-024
Identities = 45/76 (59%), Positives = 52/76 (68%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
FPER GQPECQ+Y+KTG CKFG CKFHHPRD+ L+ +G PLRP E C +Y
Sbjct: 271 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYT 330
Query: 183 RTGQCKFASTCKFHHP 230
R G CKF +CKF HP
Sbjct: 331 RYGICKFGPSCKFDHP 346
Score = 100 bits (247), Expect = 2e-022
Identities = 40/77 (51%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
+PER G+P+C YY++TG C+FG+TC+F+HPRD+ + + YP R + EC YYL
Sbjct: 37 YPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMR-GEYPERIGQPECEYYL 95
Query: 183 RTGQCKFASTCKFHHPQ 233
+TG CKF TCKFHHP+
Sbjct: 96 KTGTCKFGVTCKFHHPR 112
>TAIR9_protein||AT5G16540.2 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA
binding / nuclease/ nucleic acid binding | chr5:5403437-5405034
FORWARD
Length = 369
Score = 163 bits (410), Expect = 3e-041
Identities = 71/100 (71%), Positives = 85/100 (85%), Gaps = 2/100 (2%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
+PERIGQPEC++YLKTGTCKFG TCKFHHPR+KAGI G V++N+L YPLRPNE +C+Y+L
Sbjct: 84 YPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFL 143
Query: 183 RTGQCKFASTCKFHHP--QPTNMMVSLSGSPVYPTVQSPT 296
R GQCKF TCKF+HP Q TN+MVS+ GSPVY +QS T
Sbjct: 144 RIGQCKFGGTCKFNHPQTQSTNLMVSVRGSPVYSALQSLT 183
Score = 89 bits (220), Expect = 3e-019
Identities = 42/76 (55%), Positives = 48/76 (63%), Gaps = 7/76 (9%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
FPER GQPECQ+Y+KTG CKFG CKFHHPRD+ L+ G PL C +Y
Sbjct: 240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLS-SGEPL------CVFYS 292
Query: 183 RTGQCKFASTCKFHHP 230
R G CKF +CKF HP
Sbjct: 293 RYGICKFGPSCKFDHP 308
>TAIR9_protein||AT5G16540.3 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA
binding / nuclease/ nucleic acid binding | chr5:5403598-5405034
FORWARD
Length = 355
Score = 163 bits (410), Expect = 3e-041
Identities = 71/100 (71%), Positives = 85/100 (85%), Gaps = 2/100 (2%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
+PERIGQPEC++YLKTGTCKFG TCKFHHPR+KAGI G V++N+L YPLRPNE +C+Y+L
Sbjct: 63 YPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFL 122
Query: 183 RTGQCKFASTCKFHHP--QPTNMMVSLSGSPVYPTVQSPT 296
R GQCKF TCKF+HP Q TN+MVS+ GSPVY +QS T
Sbjct: 123 RIGQCKFGGTCKFNHPQTQSTNLMVSVRGSPVYSALQSLT 162
Score = 106 bits (262), Expect = 4e-024
Identities = 45/76 (59%), Positives = 52/76 (68%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
FPER GQPECQ+Y+KTG CKFG CKFHHPRD+ L+ +G PLRP E C +Y
Sbjct: 219 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYS 278
Query: 183 RTGQCKFASTCKFHHP 230
R G CKF +CKF HP
Sbjct: 279 RYGICKFGPSCKFDHP 294
>TAIR9_protein||AT5G16540.1 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA
binding / nuclease/ nucleic acid binding | chr5:5403437-5405034
FORWARD
Length = 376
Score = 163 bits (410), Expect = 3e-041
Identities = 71/100 (71%), Positives = 85/100 (85%), Gaps = 2/100 (2%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
+PERIGQPEC++YLKTGTCKFG TCKFHHPR+KAGI G V++N+L YPLRPNE +C+Y+L
Sbjct: 84 YPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFL 143
Query: 183 RTGQCKFASTCKFHHP--QPTNMMVSLSGSPVYPTVQSPT 296
R GQCKF TCKF+HP Q TN+MVS+ GSPVY +QS T
Sbjct: 144 RIGQCKFGGTCKFNHPQTQSTNLMVSVRGSPVYSALQSLT 183
Score = 106 bits (262), Expect = 4e-024
Identities = 45/76 (59%), Positives = 52/76 (68%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
FPER GQPECQ+Y+KTG CKFG CKFHHPRD+ L+ +G PLRP E C +Y
Sbjct: 240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYS 299
Query: 183 RTGQCKFASTCKFHHP 230
R G CKF +CKF HP
Sbjct: 300 RYGICKFGPSCKFDHP 315
>TAIR9_protein||AT2G47850.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr2:19595953-19598119 FORWARD
Length = 469
Score = 138 bits (346), Expect = 8e-034
Identities = 60/99 (60%), Positives = 71/99 (71%), Gaps = 3/99 (3%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
+PER G+P CQ+YLKTGTCKFGA+CKFHHP++ G V LNI GYP+R + EC+YYL
Sbjct: 87 YPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYYL 146
Query: 183 RTGQCKFASTCKFHHPQPTNMMV---SLSGSPVYPTVQS 290
+TGQCKF TCKFHHPQP V S YP+VQS
Sbjct: 147 KTGQCKFGITCKFHHPQPAGTTVPPPPASAPQFYPSVQS 185
Score = 114 bits (284), Expect = 1e-026
Identities = 52/96 (54%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
FPER G+PECQYYLKTG CKFG +CKFHHPRD+ L+ +G PLRP C +Y+
Sbjct: 286 FPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYV 345
Query: 183 RTGQCKFASTCKFHHPQPT----NMMVSLSGSPVYP 278
+ G CKF STCKF HP T SL+ +PV P
Sbjct: 346 QNGFCKFGSTCKFDHPMGTIRYNPSASSLADAPVAP 381
Score = 92 bits (226), Expect = 7e-020
Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
+PER G P+C YY++TG C +G C+++HPRD+A + V YP R E C +YL
Sbjct: 42 YPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASVEATVRAT-GQYPERFGEPPCQFYL 100
Query: 183 RTGQCKFASTCKFHHPQ 233
+TG CKF ++CKFHHP+
Sbjct: 101 KTGTCKFGASCKFHHPK 117
>TAIR9_protein||AT2G47850.3 | Symbols: | zinc finger (CCCH-type) family protein
| chr2:19595953-19598119 FORWARD
Length = 469
Score = 138 bits (346), Expect = 8e-034
Identities = 60/99 (60%), Positives = 71/99 (71%), Gaps = 3/99 (3%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
+PER G+P CQ+YLKTGTCKFGA+CKFHHP++ G V LNI GYP+R + EC+YYL
Sbjct: 87 YPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYYL 146
Query: 183 RTGQCKFASTCKFHHPQPTNMMV---SLSGSPVYPTVQS 290
+TGQCKF TCKFHHPQP V S YP+VQS
Sbjct: 147 KTGQCKFGITCKFHHPQPAGTTVPPPPASAPQFYPSVQS 185
Score = 114 bits (284), Expect = 1e-026
Identities = 52/96 (54%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
FPER G+PECQYYLKTG CKFG +CKFHHPRD+ L+ +G PLRP C +Y+
Sbjct: 286 FPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYV 345
Query: 183 RTGQCKFASTCKFHHPQPT----NMMVSLSGSPVYP 278
+ G CKF STCKF HP T SL+ +PV P
Sbjct: 346 QNGFCKFGSTCKFDHPMGTIRYNPSASSLADAPVAP 381
Score = 92 bits (226), Expect = 7e-020
Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
+PER G P+C YY++TG C +G C+++HPRD+A + V YP R E C +YL
Sbjct: 42 YPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASVEATVRAT-GQYPERFGEPPCQFYL 100
Query: 183 RTGQCKFASTCKFHHPQ 233
+TG CKF ++CKFHHP+
Sbjct: 101 KTGTCKFGASCKFHHPK 117
>TAIR9_protein||AT5G18550.1 | Symbols: | nucleic acid binding / zinc ion
binding | chr5:6160515-6162729 FORWARD
Length = 466
Score = 124 bits (311), Expect = 9e-030
Identities = 55/104 (52%), Positives = 74/104 (71%), Gaps = 10/104 (9%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAG--IAGRVALNILGYPLRPNEIECAY 176
FPER+GQP CQ++++TGTCKFGA+CK+HHPR G V+LN +G+PLRP E EC+Y
Sbjct: 94 FPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSY 153
Query: 177 YLRTGQCKFASTCKFHHPQPTNMMV-------SLSGSP-VYPTV 284
++RTGQCKF STC++HHP P + LS P +YP++
Sbjct: 154 FMRTGQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPTMYPSL 197
Score = 91 bits (225), Expect = 9e-020
Identities = 38/99 (38%), Positives = 62/99 (62%), Gaps = 7/99 (7%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
FPER +P+C YYL+TG C +G+ C+F+HPR++A + G + +P R + C +++
Sbjct: 48 FPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFM 107
Query: 183 RTGQCKFASTCKFHHPQP-------TNMMVSLSGSPVYP 278
RTG CKF ++CK+HHP+ T + ++ G P+ P
Sbjct: 108 RTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRP 146
Score = 90 bits (221), Expect = 3e-019
Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
FP+R QPECQY+++TG CKFG +C+FHHP + A L+ +G PLRP + C ++
Sbjct: 297 FPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEAS-TLSHIGLPLRPGAVPCTHFA 355
Query: 183 RTGQCKFASTCKFHHPQPTNMMVSLSGSP 269
+ G CKF CKF H ++ SLS SP
Sbjct: 356 QHGICKFGPACKFDHSLGSS---SLSYSP 381
>TAIR9_protein||AT3G06410.1 | Symbols: | nucleic acid binding / zinc ion
binding | chr3:1947471-1949528 REVERSE
Length = 463
Score = 124 bits (310), Expect = 1e-029
Identities = 55/98 (56%), Positives = 70/98 (71%), Gaps = 6/98 (6%)
Frame = +3
Query: 6 PERIGQPECQYYLKTGTCKFGATCKFHHPRD--KAGIAGRVALNILGYPLRPNEIECAYY 179
PER+G P CQ++++TGTCKFGA+CK+HHPR G V+L+ LGYPLRP E EC+YY
Sbjct: 98 PERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEKECSYY 157
Query: 180 LRTGQCKFASTCKFHHPQPTNMMVSLSGSPVYPTVQSP 293
LRTGQCKF TC+F+HP P +++ G P P Q P
Sbjct: 158 LRTGQCKFGLTCRFNHPVP----LAVQGPPQQPQQQQP 191
Score = 94 bits (233), Expect = 1e-020
Identities = 38/88 (43%), Positives = 56/88 (63%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
FP+R QPECQY+++TG CKFG++C++HHP D + L+ +G PLRP +C ++
Sbjct: 304 FPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFA 363
Query: 183 RTGQCKFASTCKFHHPQPTNMMVSLSGS 266
+ G CKF CKF H +++ S S S
Sbjct: 364 QHGICKFGPACKFDHSMSSSLSYSPSAS 391
Score = 89 bits (220), Expect = 3e-019
Identities = 34/77 (44%), Positives = 51/77 (66%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
+PER +P+C YYL+TG C +G+ C+F+HPRD+ + G V P R C +++
Sbjct: 51 YPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHPVCQHFM 110
Query: 183 RTGQCKFASTCKFHHPQ 233
RTG CKF ++CK+HHP+
Sbjct: 111 RTGTCKFGASCKYHHPR 127
>TAIR9_protein||AT1G04990.2 | Symbols: | zinc finger (CCCH-type) family protein
| chr1:1419368-1421454 REVERSE
Length = 405
Score = 121 bits (301), Expect = 1e-028
Identities = 51/91 (56%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Frame = +3
Query: 6 PERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYLR 185
PERIGQP+C+Y+LKTG CK+G TCK+HHP+D+ G A V N++G P+R E C YYLR
Sbjct: 88 PERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNG-AQPVMFNVIGLPMRLGEKPCPYYLR 146
Query: 186 TGQCKFASTCKFHHPQPTNMMVSLSGSPVYP 278
TG C+F CKFHHPQP N + G +P
Sbjct: 147 TGTCRFGVACKFHHPQPDNGHSTAYGMSSFP 177
>TAIR9_protein||AT1G04990.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr1:1419368-1421454 REVERSE
Length = 405
Score = 121 bits (301), Expect = 1e-028
Identities = 51/91 (56%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Frame = +3
Query: 6 PERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYLR 185
PERIGQP+C+Y+LKTG CK+G TCK+HHP+D+ G A V N++G P+R E C YYLR
Sbjct: 88 PERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNG-AQPVMFNVIGLPMRLGEKPCPYYLR 146
Query: 186 TGQCKFASTCKFHHPQPTNMMVSLSGSPVYP 278
TG C+F CKFHHPQP N + G +P
Sbjct: 147 TGTCRFGVACKFHHPQPDNGHSTAYGMSSFP 177
>TAIR9_protein||AT2G47850.2 | Symbols: | zinc finger (CCCH-type) family protein
| chr2:19595953-19598119 FORWARD
Length = 443
Score = 114 bits (284), Expect = 1e-026
Identities = 52/96 (54%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
FPER G+PECQYYLKTG CKFG +CKFHHPRD+ L+ +G PLRP C +Y+
Sbjct: 260 FPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYV 319
Query: 183 RTGQCKFASTCKFHHPQPT----NMMVSLSGSPVYP 278
+ G CKF STCKF HP T SL+ +PV P
Sbjct: 320 QNGFCKFGSTCKFDHPMGTIRYNPSASSLADAPVAP 355
Score = 92 bits (226), Expect = 7e-020
Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
+PER G P+C YY++TG C +G C+++HPRD+A + V YP R E C +YL
Sbjct: 42 YPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASVEATVRAT-GQYPERFGEPPCQFYL 100
Query: 183 RTGQCKFASTCKFHHPQ 233
+TG CKF ++CKFHHP+
Sbjct: 101 KTGTCKFGASCKFHHPK 117
>TAIR9_protein||AT3G48440.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr3:17941402-17943576 FORWARD
Length = 449
Score = 105 bits (260), Expect = 8e-024
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +3
Query: 12 RIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYLRTG 191
++G +C+YY +TG CK+G TC+F+H K+G+A LN LG PLRP E+EC YY+R G
Sbjct: 158 KLGLIDCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNG 217
Query: 192 QCKFASTCKFHHPQPTNM 245
CK+ + CKF+HP PT +
Sbjct: 218 SCKYGAECKFNHPDPTTI 235
Score = 93 bits (229), Expect = 3e-020
Identities = 40/75 (53%), Positives = 48/75 (64%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
FPER QPEC YY+KTG CKF CK+HHP+++ ALN G PLRP++ C YY
Sbjct: 343 FPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYYS 402
Query: 183 RTGQCKFASTCKFHH 227
R G CKF C+F H
Sbjct: 403 RYGICKFGPACRFDH 417
>TAIR9_protein||AT2G32930.1 | Symbols: ZFN2 | ZFN2 (ZINC FINGER NUCLEASE 2); DNA
binding / nuclease/ nucleic acid binding | chr2:13965990-13968419
REVERSE
Length = 454
Score = 104 bits (258), Expect = 1e-023
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 5/77 (6%)
Frame = +3
Query: 6 PERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYLR 185
PER+GQP+C+ TG CK+G TCK+HHP+D+ G AG V N+LG P+R E C YY++
Sbjct: 86 PERVGQPDCE----TGACKYGPTCKYHHPKDRNG-AGPVLFNVLGLPMRQGEKPCPYYMQ 140
Query: 186 TGQCKFASTCKFHHPQP 236
TG C+F CKFHHP P
Sbjct: 141 TGLCRFGVACKFHHPHP 157
>TAIR9_protein||AT3G12680.1 | Symbols: HUA1 | HUA1 (ENHANCER OF AG-4 1); RNA
binding | chr3:4025276-4028999 REVERSE
Length = 525
Score = 104 bits (257), Expect = 2e-023
Identities = 43/89 (48%), Positives = 56/89 (62%), Gaps = 7/89 (7%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGR-------VALNILGYPLRPNE 161
+P+R GQ EC YY+KTG CKFG CKFHHP D+ + V L++ GYP R
Sbjct: 417 YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGA 476
Query: 162 IECAYYLRTGQCKFASTCKFHHPQPTNMM 248
+ C YY++TG CK+ +TCKF HP P +M
Sbjct: 477 LNCPYYMKTGTCKYGATCKFDHPPPGEVM 505
>TAIR9_protein||AT5G63260.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr5:25361900-25364453 FORWARD
Length = 436
Score = 92 bits (227), Expect = 5e-020
Identities = 41/86 (47%), Positives = 50/86 (58%)
Frame = +3
Query: 3 FPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEIECAYYL 182
FPER QPEC YYLKTG CKF CK+HHP+++ + N G PLRP++ C +Y
Sbjct: 331 FPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYS 390
Query: 183 RTGQCKFASTCKFHHPQPTNMMVSLS 260
R G CKF C+F H P S S
Sbjct: 391 RYGICKFGPACRFDHSIPPTFSPSSS 416
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,826,560,082
Number of Sequences: 33410
Number of Extensions: 3826560082
Number of Successful Extensions: 217547645
Number of sequences better than 0.0: 0
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