BLASTX 7.6.2
Query= RU22450 /QuerySize=406
(405 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, N... 209 5e-055
TAIR9_protein||AT2G15400.1 | Symbols: RBP36B, NRPE3B | NRPE3B; D... 183 3e-047
TAIR9_protein||AT2G15400.2 | Symbols: RBP36B, NRPE3B | NRPE3B; D... 183 3e-047
TAIR9_protein||AT1G60850.3 | Symbols: ATRPAC42, AAC42 | ATRPAC42... 69 8e-013
TAIR9_protein||AT1G60850.2 | Symbols: ATRPAC42, AAC42 | ATRPAC42... 69 8e-013
TAIR9_protein||AT1G60850.1 | Symbols: ATRPAC42, AAC42 | ATRPAC42... 69 8e-013
TAIR9_protein||AT1G60620.1 | Symbols: ATRPAC43 | ATRPAC43; DNA b... 65 1e-011
>TAIR9_protein||AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A |
NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization
| chr2:6733661-6735482 FORWARD
Length = 320
Score = 209 bits (531), Expect = 5e-055
Identities = 98/120 (81%), Positives = 113/120 (94%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
M+G +YQRFP++KIRE++ DY KFELR+TD S+ANALRRVMI+EVPTVAIDLVEIE+NSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEF L ++C +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
>TAIR9_protein||AT2G15400.1 | Symbols: RBP36B, NRPE3B | NRPE3B; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr2:6713022-6714386 FORWARD
Length = 320
Score = 183 bits (464), Expect = 3e-047
Identities = 88/120 (73%), Positives = 105/120 (87%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
M+G +YQRFP VKIRE++ DY KFELR+TD S+ANALRRVMI+EVPT+AI LV+IE+NSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIA RL LIPLTS+RAMSMRF +DC+ C+GD CE+CSVEF L A+C +DQTLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
>TAIR9_protein||AT2G15400.2 | Symbols: RBP36B, NRPE3B | NRPE3B; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr2:6713022-6713918 FORWARD
Length = 236
Score = 183 bits (464), Expect = 3e-047
Identities = 88/120 (73%), Positives = 105/120 (87%)
Frame = -3
Query: 361 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 182
M+G +YQRFP VKIRE++ DY KFELR+TD S+ANALRRVMI+EVPT+AI LV+IE+NSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 181 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 2
VLNDEFIA RL LIPLTS+RAMSMRF +DC+ C+GD CE+CSVEF L A+C +DQTLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
>TAIR9_protein||AT1G60850.3 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22398588-22400155 REVERSE
Length = 303
Score = 69 bits (167), Expect = 8e-013
Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Frame = -3
Query: 355 GKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVL 176
G Y F +V + + ++F++ DA+ ANA RR++IAEVP++AI+ V I N+SV+
Sbjct: 68 GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 126
Query: 175 NDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARC 26
DE +AHR+GLIP+ +D + S + D E ++ F L +C
Sbjct: 127 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKC 170
>TAIR9_protein||AT1G60850.2 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22398078-22400155 REVERSE
Length = 376
Score = 69 bits (167), Expect = 8e-013
Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Frame = -3
Query: 355 GKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVL 176
G Y F +V + + ++F++ DA+ ANA RR++IAEVP++AI+ V I N+SV+
Sbjct: 68 GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 126
Query: 175 NDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARC 26
DE +AHR+GLIP+ +D + S + D E ++ F L +C
Sbjct: 127 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKC 170
>TAIR9_protein||AT1G60850.1 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22398078-22400155 REVERSE
Length = 376
Score = 69 bits (167), Expect = 8e-013
Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Frame = -3
Query: 355 GKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVL 176
G Y F +V + + ++F++ DA+ ANA RR++IAEVP++AI+ V I N+SV+
Sbjct: 68 GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 126
Query: 175 NDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARC 26
DE +AHR+GLIP+ +D + S + D E ++ F L +C
Sbjct: 127 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKC 170
>TAIR9_protein||AT1G60620.1 | Symbols: ATRPAC43 | ATRPAC43; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22331225-22333370 FORWARD
Length = 386
Score = 65 bits (157), Expect = 1e-011
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Frame = -3
Query: 331 RVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSSVLNDEFIAHR 152
+V + + + F++ A +ANA RR+++AE+P++AI+ V + N+SV+ DE +AHR
Sbjct: 82 KVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHR 141
Query: 151 LGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARC 26
LGLIP+ +D + S + D E ++ F L +C
Sbjct: 142 LGLIPIAADPRLFEYLS------ENDQPNEKNTIVFKLHVKC 177
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,884,545,436
Number of Sequences: 33410
Number of Extensions: 3884545436
Number of Successful Extensions: 217906452
Number of sequences better than 0.0: 0
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