BLASTX 7.6.2
Query= RU22986 /QuerySize=670
(669 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G28910.2 | Symbols: | LOCATED IN: cellular_co... 50 1e-006
TAIR9_protein||AT4G28910.1 | Symbols: | LOCATED IN: cellular_co... 50 1e-006
TAIR9_protein||AT4G28910.3 | Symbols: | LOCATED IN: cellular_co... 50 1e-006
>TAIR9_protein||AT4G28910.2 | Symbols: | LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675
(InterPro:IPR012463); BEST Arabidopsis thaliana protein match is:
nuclear transport factor 2 (NTF2) family protein / RNA recognition
motif (RRM)-containing protein (TAIR:AT3G07250.1); Has 223 Blast hits
to 204 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 48;
Fungi - 32; Plants - 89; Viruses - 3; Other Eukaryotes - 38 (source:
NCBI BLink). | chr4:14264330-14265680 REVERSE
Length = 426
Score = 50 bits (117), Expect = 1e-006
Identities = 25/51 (49%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Frame = +3
Query: 519 EERQTDAGNKRKTLFEEMNQQKKHEREAHYTDMHD-KTRASHIS-ITEDGS 665
+E + +AGNKRK F MN KK E+++ + DMH+ KT+ASH+S T++GS
Sbjct: 106 DESRKEAGNKRKFGFPGMNDDKKKEKDSSHVDMHEKKTKASHVSTATDEGS 156
>TAIR9_protein||AT4G28910.1 | Symbols: | LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675
(InterPro:IPR012463); BEST Arabidopsis thaliana protein match is:
nuclear transport factor 2 (NTF2) family protein / RNA recognition
motif (RRM)-containing protein (TAIR:AT3G07250.1); Has 223 Blast hits
to 204 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 48;
Fungi - 32; Plants - 89; Viruses - 3; Other Eukaryotes - 38 (source:
NCBI BLink). | chr4:14264330-14265680 REVERSE
Length = 426
Score = 50 bits (117), Expect = 1e-006
Identities = 25/51 (49%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Frame = +3
Query: 519 EERQTDAGNKRKTLFEEMNQQKKHEREAHYTDMHD-KTRASHIS-ITEDGS 665
+E + +AGNKRK F MN KK E+++ + DMH+ KT+ASH+S T++GS
Sbjct: 106 DESRKEAGNKRKFGFPGMNDDKKKEKDSSHVDMHEKKTKASHVSTATDEGS 156
>TAIR9_protein||AT4G28910.3 | Symbols: | LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675
(InterPro:IPR012463); BEST Arabidopsis thaliana protein match is:
nuclear transport factor 2 (NTF2) family protein / RNA recognition
motif (RRM)-containing protein (TAIR:AT3G07250.1); Has 223 Blast hits
to 204 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 48;
Fungi - 32; Plants - 89; Viruses - 3; Other Eukaryotes - 38 (source:
NCBI BLink). | chr4:14264330-14265680 REVERSE
Length = 426
Score = 50 bits (117), Expect = 1e-006
Identities = 25/51 (49%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Frame = +3
Query: 519 EERQTDAGNKRKTLFEEMNQQKKHEREAHYTDMHD-KTRASHIS-ITEDGS 665
+E + +AGNKRK F MN KK E+++ + DMH+ KT+ASH+S T++GS
Sbjct: 106 DESRKEAGNKRKFGFPGMNDDKKKEKDSSHVDMHEKKTKASHVSTATDEGS 156
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,971,710,044
Number of Sequences: 33410
Number of Extensions: 3971710044
Number of Successful Extensions: 218040509
Number of sequences better than 0.0: 0
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