BLASTX 7.6.2
Query= RU23008 /QuerySize=862
(861 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G67230.1 | Symbols: LINC1 | LINC1 (LITTLE NUCL... 64 8e-011
>TAIR9_protein||AT1G67230.1 | Symbols: LINC1 | LINC1 (LITTLE NUCLEI1) |
chr1:25151561-25156032 REVERSE
Length = 1133
Score = 64 bits (155), Expect = 8e-011
Identities = 62/206 (30%), Positives = 90/206 (43%), Gaps = 14/206 (6%)
Frame = +3
Query: 132 ATVNRTRSVKAVVKDAKAILGEAFETNDGQYQNGTAEDSANMYTESHDDSSLAXXXXXXX 311
A RTRSVK VV DAKA+ GE+ + +DS T S A
Sbjct: 901 ARTRRTRSVKDVVDDAKALYGESINLYEPNDSTENVDDSTKASTGETGRSDKAISKNGRK 960
Query: 312 XXXXXXAQTSQVAVSEHGGDDSE-RSDSVMTG-QRKKRREKVPAAEQ-PPNERRYNLRRS 482
+T +E G++S+ +SDSV G ++KRR+KV + +Q +RYNLRR
Sbjct: 961 RGRVGSLRT---CTTEQDGNESDGKSDSVTGGAHQRKRRQKVASEQQGEVVGQRYNLRRP 1017
Query: 483 XXXXXXXXXXXSHDLVKQNEEVDSARDTEAEILYSKAAPATSTGFA-GENGGSTHFVRCX 659
L K+NE++ + E I ++A S G A +NG ST+ V+
Sbjct: 1018 RRVTGEPA------LSKKNEDIGGVQQEEG-IHCTQATATASVGVAVSDNGVSTNVVQHE 1070
Query: 660 XXXXXXXXXXXXVKNSAENMAVSEGV 737
K + E+ A+SE V
Sbjct: 1071 ATADSEDTDAGSPKRTDESEAMSEDV 1096
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,971,710,044
Number of Sequences: 33410
Number of Extensions: 3971710044
Number of Successful Extensions: 218040509
Number of sequences better than 0.0: 0
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