BLASTX 7.6.2
Query= RU23524 /QuerySize=765
(764 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G14080.1 | Symbols: | small nuclear ribonucle... 193 1e-049
TAIR9_protein||AT3G14080.2 | Symbols: | small nuclear ribonucle... 193 1e-049
TAIR9_protein||AT1G19120.1 | Symbols: | small nuclear ribonucle... 168 6e-042
>TAIR9_protein||AT3G14080.1 | Symbols: | small nuclear ribonucleoprotein,
putative / snRNP, putative / Sm protein, putative |
chr3:4667717-4668989 FORWARD
Length = 129
Score = 193 bits (489), Expect = 1e-049
Identities = 97/129 (75%), Positives = 103/129 (79%)
Frame = -3
Query: 600 MSWAGPEDVYLSTSLASYXXXXXXXXXXXXXXXXXXXXSFDQFANAVLEGACERVIVGEL 421
MSWAGPE++YLSTSLASY SFDQFANAVLEGACERVIVGE
Sbjct: 1 MSWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ 60
Query: 420 YCDLPLGLYVIRGENVVLIGELDSEREELPPHMTRVSPAEIKRAQKAEREASDLKGTMRK 241
YCD+PLGLYVIRGENVVLIGELD+EREELPPHM RVS AEIKRAQK EREAS+L+GTMRK
Sbjct: 61 YCDIPLGLYVIRGENVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRK 120
Query: 240 RMEFLDMD* 214
RMEFLD D*
Sbjct: 121 RMEFLDFD* 129
>TAIR9_protein||AT3G14080.2 | Symbols: | small nuclear ribonucleoprotein,
putative / snRNP, putative / Sm protein, putative |
chr3:4667717-4668989 FORWARD
Length = 129
Score = 193 bits (489), Expect = 1e-049
Identities = 97/129 (75%), Positives = 103/129 (79%)
Frame = -3
Query: 600 MSWAGPEDVYLSTSLASYXXXXXXXXXXXXXXXXXXXXSFDQFANAVLEGACERVIVGEL 421
MSWAGPE++YLSTSLASY SFDQFANAVLEGACERVIVGE
Sbjct: 1 MSWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ 60
Query: 420 YCDLPLGLYVIRGENVVLIGELDSEREELPPHMTRVSPAEIKRAQKAEREASDLKGTMRK 241
YCD+PLGLYVIRGENVVLIGELD+EREELPPHM RVS AEIKRAQK EREAS+L+GTMRK
Sbjct: 61 YCDIPLGLYVIRGENVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRK 120
Query: 240 RMEFLDMD* 214
RMEFLD D*
Sbjct: 121 RMEFLDFD* 129
>TAIR9_protein||AT1G19120.1 | Symbols: | small nuclear ribonucleoprotein,
putative / snRNP, putative / Sm protein, putative |
chr1:6608288-6609162 FORWARD
Length = 129
Score = 168 bits (423), Expect = 6e-042
Identities = 85/129 (65%), Positives = 96/129 (74%)
Frame = -3
Query: 600 MSWAGPEDVYLSTSLASYXXXXXXXXXXXXXXXXXXXXSFDQFANAVLEGACERVIVGEL 421
MSWA P+D++ STSLA+Y SFDQFANAVLE A ERVIVG+L
Sbjct: 1 MSWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDL 60
Query: 420 YCDLPLGLYVIRGENVVLIGELDSEREELPPHMTRVSPAEIKRAQKAEREASDLKGTMRK 241
YCD+PLGLY+IRGENVVLIGELD E+EELP HM +V AEIKRAQKAE+E LKGTMRK
Sbjct: 61 YCDIPLGLYIIRGENVVLIGELDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRK 120
Query: 240 RMEFLDMD* 214
RMEFLD+D*
Sbjct: 121 RMEFLDLD* 129
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,059,965,137
Number of Sequences: 33410
Number of Extensions: 4059965137
Number of Successful Extensions: 224407966
Number of sequences better than 0.0: 0
|