BLASTX 7.6.2
Query= RU23654 /QuerySize=963
(962 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G22630.1 | Symbols: PBD1, PRCGB | PBD1 (20S PR... 348 4e-096
TAIR9_protein||AT4G14800.1 | Symbols: PBD2 | PBD2 (20S PROTEASOM... 340 9e-094
>TAIR9_protein||AT3G22630.1 | Symbols: PBD1, PRCGB | PBD1 (20S PROTEASOME BETA
SUBUNIT D1); peptidase/ threonine-type endopeptidase |
chr3:8009709-8010774 REVERSE
Length = 205
Score = 348 bits (891), Expect = 4e-096
Identities = 172/199 (86%), Positives = 184/199 (92%)
Frame = -3
Query: 840 IFGLVGNDFAIVAADTSAVHSILVHKNNEDKIMVLDSHKLIAASGEPGDRVQFTEYIQKN 661
+FGLVGN FAIVAADTSAVHSIL+HKNNEDKIMVLDSHKL+AASGEPGDRVQFTEY+QKN
Sbjct: 4 VFGLVGNGFAIVAADTSAVHSILLHKNNEDKIMVLDSHKLVAASGEPGDRVQFTEYVQKN 63
Query: 660 VSLYQFRNGIPLTTAAAANFTRGELATALRKNPYHVNILMAGYDKEKGAELYYIDYIASL 481
VSLY+FRNGIPLTTAAAANFTRGELATALRKNPY VNILMAGYD E GA LYYIDYIA+L
Sbjct: 64 VSLYKFRNGIPLTTAAAANFTRGELATALRKNPYSVNILMAGYDDESGASLYYIDYIATL 123
Query: 480 HKVEKGAFGYGSYFALSLMDRLYHKGMSVEEAIALVDKIIIEIRSRLVVAPPNFVIKIVD 301
HKV+KGAFGYGSYF+LS MDR Y MSVEEAI LVDK I+EIRSRLVVAPPNFVIKIVD
Sbjct: 124 HKVDKGAFGYGSYFSLSTMDRHYRSDMSVEEAIELVDKCILEIRSRLVVAPPNFVIKIVD 183
Query: 300 KDGAREYAWRESIKDAGVA 244
KDGAR+YAWR+S+KD A
Sbjct: 184 KDGARDYAWRQSVKDVTTA 202
>TAIR9_protein||AT4G14800.1 | Symbols: PBD2 | PBD2 (20S PROTEASOME BETA SUBUNIT
2); peptidase/ threonine-type endopeptidase | chr4:8500398-8502058
FORWARD
Length = 200
Score = 340 bits (871), Expect = 9e-094
Identities = 169/196 (86%), Positives = 179/196 (91%)
Frame = -3
Query: 840 IFGLVGNDFAIVAADTSAVHSILVHKNNEDKIMVLDSHKLIAASGEPGDRVQFTEYIQKN 661
+FGLVGN FAIVAADTSAVHSIL+HKN EDKIM LDSHKL+AASGEPGDRVQFTEY+QKN
Sbjct: 4 VFGLVGNGFAIVAADTSAVHSILLHKNKEDKIMTLDSHKLVAASGEPGDRVQFTEYVQKN 63
Query: 660 VSLYQFRNGIPLTTAAAANFTRGELATALRKNPYHVNILMAGYDKEKGAELYYIDYIASL 481
VSLYQFRNGIPL+TAAAANFTRGELATALRKNPY VNILMAGYDKE GA LYYIDYIA+L
Sbjct: 64 VSLYQFRNGIPLSTAAAANFTRGELATALRKNPYSVNILMAGYDKEAGASLYYIDYIATL 123
Query: 480 HKVEKGAFGYGSYFALSLMDRLYHKGMSVEEAIALVDKIIIEIRSRLVVAPPNFVIKIVD 301
HKV+KGAFGYGSYF+LS MDR Y MSVEEAI LVDK I+EIRSRLV+APPNFVIKIVD
Sbjct: 124 HKVDKGAFGYGSYFSLSTMDRHYRSDMSVEEAIELVDKCILEIRSRLVIAPPNFVIKIVD 183
Query: 300 KDGAREYAWRESIKDA 253
KDGAREY WR S DA
Sbjct: 184 KDGAREYGWRISTADA 199
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,059,965,137
Number of Sequences: 33410
Number of Extensions: 4059965137
Number of Successful Extensions: 224407966
Number of sequences better than 0.0: 0
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