BLASTX 7.6.2
Query= RU23850 /QuerySize=295
(294 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 73 3e-014
TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 73 3e-014
TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 73 3e-014
TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 53 3e-008
TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 53 3e-008
TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 53 3e-008
TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 52 5e-008
TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 52 5e-008
TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 52 5e-008
TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 49 5e-007
TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 49 5e-007
TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 49 5e-007
TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 |... 49 7e-007
>TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 145
Score = 73 bits (177), Expect = 3e-014
Identities = 36/65 (55%), Positives = 41/65 (63%)
Frame = -1
Query: 198 MKGGKSHTKKADSKLAVNXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFRKQFNKEN 19
MKG KS T+ SKL+V DPNKPKRPASAFFVFME+FR+ F KEN
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 18 PKPQS 4
PK +S
Sbjct: 61 PKNKS 65
>TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 143
Score = 73 bits (177), Expect = 3e-014
Identities = 36/65 (55%), Positives = 41/65 (63%)
Frame = -1
Query: 198 MKGGKSHTKKADSKLAVNXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFRKQFNKEN 19
MKG KS T+ SKL+V DPNKPKRPASAFFVFME+FR+ F KEN
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 18 PKPQS 4
PK +S
Sbjct: 61 PKNKS 65
>TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 144
Score = 73 bits (177), Expect = 3e-014
Identities = 36/65 (55%), Positives = 41/65 (63%)
Frame = -1
Query: 198 MKGGKSHTKKADSKLAVNXXXXXXXXXXXXXXXDPNKPKRPASAFFVFMEEFRKQFNKEN 19
MKG KS T+ SKL+V DPNKPKRPASAFFVFME+FR+ F KEN
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 18 PKPQS 4
PK +S
Sbjct: 61 PKNKS 65
>TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 53 bits (125), Expect = 3e-008
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = -1
Query: 99 DPNKPKRPASAFFVFMEEFRKQFNKENPKPQS 4
DPN+PKRP SAFFVF+E+FRK+FN NP +S
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKS 62
>TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 53 bits (125), Expect = 3e-008
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = -1
Query: 99 DPNKPKRPASAFFVFMEEFRKQFNKENPKPQS 4
DPN+PKRP SAFFVF+E+FRK+FN NP +S
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKS 62
>TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 135
Score = 53 bits (125), Expect = 3e-008
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = -1
Query: 99 DPNKPKRPASAFFVFMEEFRKQFNKENPKPQS 4
DPN+PKRP SAFFVF+E+FRK+FN NP +S
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKS 62
>TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181174 FORWARD
Length = 142
Score = 52 bits (124), Expect = 5e-008
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = -1
Query: 99 DPNKPKRPASAFFVFMEEFRKQFNKENPKPQS 4
DPNKPKRP+SAFFVFME+FR + +E+PK +S
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKS 62
>TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181193 FORWARD
Length = 148
Score = 52 bits (124), Expect = 5e-008
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = -1
Query: 99 DPNKPKRPASAFFVFMEEFRKQFNKENPKPQS 4
DPNKPKRP+SAFFVFME+FR + +E+PK +S
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKS 62
>TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181170 FORWARD
Length = 141
Score = 52 bits (124), Expect = 5e-008
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = -1
Query: 99 DPNKPKRPASAFFVFMEEFRKQFNKENPKPQS 4
DPNKPKRP+SAFFVFME+FR + +E+PK +S
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKS 62
>TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 49 bits (115), Expect = 5e-007
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -1
Query: 99 DPNKPKRPASAFFVFMEEFRKQFNKENP 16
DPNKPKR SAFFVF+E+FR F KENP
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENP 76
>TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 186
Score = 49 bits (115), Expect = 5e-007
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -1
Query: 99 DPNKPKRPASAFFVFMEEFRKQFNKENP 16
DPNKPKR SAFFVF+E+FR F KENP
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENP 76
>TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 49 bits (115), Expect = 5e-007
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -1
Query: 99 DPNKPKRPASAFFVFMEEFRKQFNKENP 16
DPNKPKR SAFFVF+E+FR F KENP
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENP 76
>TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 | HMGB5 (HIGH
MOBILITY GROUP B 5); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor |
chr4:16887363-16888184 REVERSE
Length = 126
Score = 49 bits (114), Expect = 7e-007
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = -1
Query: 99 DPNKPKRPASAFFVFMEEFRKQFNKENPKPQS 4
DPN+PK+P S FFVF+++FRK+FN NP +S
Sbjct: 30 DPNRPKKPPSPFFVFLDDFRKEFNLANPDNKS 61
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,116,082,589
Number of Sequences: 33410
Number of Extensions: 4116082589
Number of Successful Extensions: 224650338
Number of sequences better than 0.0: 0
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