BLASTX 7.6.2
Query= RU24875 /QuerySize=483
(482 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G09850.1 | Symbols: | transcription elongatio... 155 1e-038
TAIR9_protein||AT3G10820.1 | Symbols: | DNA binding / protein b... 60 8e-010
>TAIR9_protein||AT5G09850.1 | Symbols: | transcription elongation
factor-related | chr5:3063488-3065221 REVERSE
Length = 354
Score = 155 bits (391), Expect = 1e-038
Identities = 86/147 (58%), Positives = 107/147 (72%), Gaps = 9/147 (6%)
Frame = +1
Query: 1 DIKKLLEDPDQSEDSLVELLQSLVDMDISFQDLKDTDIGRQVSQLRKQHQGEVVRKLAKQ 180
+IK+ LEDPD SE+SLVELLQ+L DMDI+FQ L++TDIGR V+++RK H VR+LAKQ
Sbjct: 129 EIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRK-HPSNNVRRLAKQ 187
Query: 181 LVRKWKGIVDEWVKLH--GEEPTNSVMVDGDSPQQK-IHQNGHHQVPDFGYSPNPHNGSS 351
LV+KWK VDEWVK + G+ S++ D DSP QK +H QVPDFGYSP P NG S
Sbjct: 188 LVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGYSPVPQNGYS 247
Query: 352 GSDKNN--SEPERKPKVI---PRREVP 417
S KN+ +EPERKP+ + PRRE P
Sbjct: 248 SSSKNSNITEPERKPRPVAPQPRRESP 274
>TAIR9_protein||AT3G10820.1 | Symbols: | DNA binding / protein binding /
transcription regulator | chr3:3387358-3389026 FORWARD
Length = 289
Score = 60 bits (143), Expect = 8e-010
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Frame = +1
Query: 4 IKKLLEDPDQSEDS-LVELLQSLVDMDISFQDLKDTDIGRQVSQLRKQHQGEVVRKLAKQ 180
I+ +L + D +DS L+E L+ L M +S LKDT+IG+ V+ LR+ H + + KLAK
Sbjct: 113 IRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRR-HSSDKISKLAKT 171
Query: 181 LVRKWKGIVDEWV----KLHGEEPTNSVMVDGDSPQQKIHQNGHHQVPDFGYSPN 333
L +WK +VD+W+ ++ G E T + +++ + H + + PN
Sbjct: 172 LFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVIDEEEAFPSPPHDLDIYAPEPN 226
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,287,271,046
Number of Sequences: 33410
Number of Extensions: 4287271046
Number of Successful Extensions: 235057511
Number of sequences better than 0.0: 0
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