BLASTX 7.6.2
Query= RU24982 /QuerySize=1353
(1352 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G43970.1 | Symbols: | La domain-containing pr... 223 3e-058
TAIR9_protein||AT5G46250.1 | Symbols: | RNA recognition motif (... 139 4e-033
TAIR9_protein||AT3G19090.1 | Symbols: | RNA-binding protein, pu... 139 5e-033
TAIR9_protein||AT2G43970.2 | Symbols: | La domain-containing pr... 119 5e-027
TAIR9_protein||AT5G46250.2 | Symbols: | RNA recognition motif (... 101 1e-021
TAIR9_protein||AT5G46250.3 | Symbols: | RNA recognition motif (... 101 1e-021
TAIR9_protein||AT4G35890.1 | Symbols: | La domain-containing pr... 52 1e-006
TAIR9_protein||AT5G21160.1 | Symbols: | La domain-containing pr... 49 7e-006
TAIR9_protein||AT1G79880.1 | Symbols: | La domain-containing pr... 49 9e-006
>TAIR9_protein||AT2G43970.1 | Symbols: | La domain-containing protein |
chr2:18205535-18208031 REVERSE
Length = 546
Score = 223 bits (566), Expect = 3e-058
Identities = 119/199 (59%), Positives = 145/199 (72%), Gaps = 8/199 (4%)
Frame = +3
Query: 270 LQLLLRNSSKLVVHEDGKKVRRQHPLTQSDMEELQSRIVVAENLPEDHCHQNLMKIFSAA 449
L +L+NS+KL V EDGKKVRR P+T+S +EELQSRI+VAENLPEDHC+QNLMKIFS
Sbjct: 249 LAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTV 308
Query: 450 GSVKTIRTCQPQTXXXXX-XXXXXXXKADGMHFSNKLHAFVEYESPELAEKAVAELNDEG 626
GSVK IRTCQPQ K+DG FSNK+HAFVEYE ELAE+AV EL++ G
Sbjct: 309 GSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAVTELSEAG 368
Query: 627 NWRSGLRVRLMLKRMS---KPGQVRGKKGQDGELQLEEEDASTHEQIHHANEKQSEDSSR 797
NWRSGL+VRLMLK + K GQ RG+KG D +++ EE+DA+T EQ EKQS+D S
Sbjct: 369 NWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQ--QPIEKQSDDCSG 426
Query: 798 QFDAHSHEQ--GEEHGNDK 848
++D H EQ GE+ GN+K
Sbjct: 427 EWDTHMQEQPIGEDQGNEK 445
Score = 102 bits (252), Expect = 9e-022
Identities = 49/70 (70%), Positives = 60/70 (85%)
Frame = +2
Query: 89 LSDEATSKILNQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALVSSHSQ 268
L +++ KI+NQVEYYFSDLNLATTDHLMRFI KDPEG+VPI VVASFKKIKA+++++SQ
Sbjct: 189 LPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQ 248
Query: 269 LATVIAELLK 298
LA V+ K
Sbjct: 249 LAAVLQNSAK 258
Score = 72 bits (175), Expect = 7e-013
Identities = 33/56 (58%), Positives = 44/56 (78%), Gaps = 4/56 (7%)
Frame = +3
Query: 915 YHHNNRNHVGT-PHNSSIGSSEQPGIGVGVARQPPGPRMPDGTRGFAMGRGRPVAV 1079
+HH++ + VGT P N+ + + EQPG+G +QPPGPRMPDGTRGF+MGRG+PV V
Sbjct: 490 HHHHHHHQVGTQPSNNPMNNMEQPGMG---KQQPPGPRMPDGTRGFSMGRGKPVMV 542
>TAIR9_protein||AT5G46250.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:18755388-18758056 FORWARD
Length = 423
Score = 139 bits (350), Expect = 4e-033
Identities = 90/265 (33%), Positives = 133/265 (50%), Gaps = 18/265 (6%)
Frame = +3
Query: 282 LRNSSKLVVHEDGKKVRRQHPLTQSDMEELQSRIVVAENLPEDHCHQNLMKIFSAAGSVK 461
L+ SS LVV D KKV+R PL ++ + + V+ ENLPEDH ++N+ +IF AGS+K
Sbjct: 163 LKESSFLVVSADEKKVKRLSPL--PEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIK 220
Query: 462 TIRTCQPQTXXXXXXXXXXXXKADGMHFSNKLHAFVEYESPELAEKAVAELNDEGNWRSG 641
++ C P +LHAFVEYE+ E AEKA A LN+E +WR+G
Sbjct: 221 SVSICDPNAVEESEKGGKKEN-----FIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNG 275
Query: 642 LRVRLMLKRMSKPGQVR-GKKGQDGELQLEEEDASTHEQIHHANEKQSEDSSRQFDAHSH 818
LRV+L+ + K Q R ++ D E ++ H+Q K++ + HS
Sbjct: 276 LRVKLLEQAAGKFAQRRPARREVDKE---KDTTGRVHDQTGGEKNKKTREHQNHRLHHSD 332
Query: 819 EQGEEHGNDKEXXXXXXXXXXXXXXXXXXXXXYHHNNRNHVGTPHNSSIGSSEQPGIGVG 998
++ G + + +H N +G H ++ SS V
Sbjct: 333 NPADDDGGNHQ-----KDKNGNKGRVVGQGRRQNHQGGNGIG--HGTASSSSHPNYHPVE 385
Query: 999 VARQPPGPRMPDGTRGFAMGRGRPV 1073
V+++PPGPRMPDGTRGF MGRG+ +
Sbjct: 386 VSKRPPGPRMPDGTRGFTMGRGKAI 410
Score = 64 bits (154), Expect = 2e-010
Identities = 29/65 (44%), Positives = 42/65 (64%)
Frame = +2
Query: 95 DEATSKILNQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALVSSHSQLA 274
DE KI+ QVEYYFSD NL T L+ + ++ +GFVPIS +A+F K+K L H+ +
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160
Query: 275 TVIAE 289
+ + E
Sbjct: 161 SALKE 165
>TAIR9_protein||AT3G19090.1 | Symbols: | RNA-binding protein, putative |
chr3:6601466-6603709 FORWARD
Length = 456
Score = 139 bits (349), Expect = 5e-033
Identities = 81/176 (46%), Positives = 105/176 (59%), Gaps = 11/176 (6%)
Frame = +3
Query: 270 LQLLLRNSSKLVVHEDGKKVRRQHPLTQSDMEELQSRIVVAENLPEDHCHQNLMKIFSAA 449
+ L LR+SSKLVV EDGKKV+R T D EELQ R VVAENLP+DH +QNL KIF
Sbjct: 200 VSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGVV 259
Query: 450 GSVKTIRTCQPQTXXXXXXXXXXXXKADGMHFSNKLHAFVEYESPELAEKAVAELNDEGN 629
G+VK IR C P K D + SNK+HA +EY++ +A+KAV +LNDE N
Sbjct: 260 GNVKAIRICHPP------ESNSSRPKGDFL-MSNKIHALIEYDNTVIADKAVEKLNDERN 312
Query: 630 WRSGLRVRLMLKRMSKPGQVRGKKGQDGEL---QLEEEDASTHEQIHHANEKQSED 788
WR GLRVRL+L R S ++ ++ DG L +L ++ H E Q ++
Sbjct: 313 WRKGLRVRLLL-RCSPKSVLKNRRNFDGILIDDELPSYESGEDSPRLHLTESQLDN 367
Score = 73 bits (177), Expect = 4e-013
Identities = 33/67 (49%), Positives = 50/67 (74%)
Frame = +2
Query: 62 HAASSKSHKLSDEATSKILNQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKI 241
+++SS + LSD+ KI+ QVEY F+D++L + + + I+KDPEG+VP+S +AS KKI
Sbjct: 131 NSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKI 190
Query: 242 KALVSSH 262
KAL S+H
Sbjct: 191 KALTSNH 197
>TAIR9_protein||AT2G43970.2 | Symbols: | La domain-containing protein |
chr2:18205535-18208031 REVERSE
Length = 530
Score = 119 bits (297), Expect = 5e-027
Identities = 61/97 (62%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
Frame = +3
Query: 270 LQLLLRNSSKLVVHEDGKKVRRQHPLTQSDMEELQSRIVVAENLPEDHCHQNLMKIFSAA 449
L +L+NS+KL V EDGKKVRR P+T+S +EELQSRI+VAENLPEDHC+QNLMKIFS
Sbjct: 249 LAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTV 308
Query: 450 GSVKTIRTCQPQTXXXXX-XXXXXXXKADGMHFSNKL 557
GSVK IRTCQPQ K+DG FSNK+
Sbjct: 309 GSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKV 345
Score = 102 bits (252), Expect = 9e-022
Identities = 49/70 (70%), Positives = 60/70 (85%)
Frame = +2
Query: 89 LSDEATSKILNQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALVSSHSQ 268
L +++ KI+NQVEYYFSDLNLATTDHLMRFI KDPEG+VPI VVASFKKIKA+++++SQ
Sbjct: 189 LPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQ 248
Query: 269 LATVIAELLK 298
LA V+ K
Sbjct: 249 LAAVLQNSAK 258
Score = 86 bits (211), Expect = 5e-017
Identities = 47/92 (51%), Positives = 62/92 (67%), Gaps = 7/92 (7%)
Frame = +3
Query: 588 LAEKAVAELNDEGNWRSGLRVRLMLKRMS---KPGQVRGKKGQDGELQLEEEDASTHEQI 758
L V EL++ GNWRSGL+VRLMLK + K GQ RG+KG D +++ EE+DA+T EQ
Sbjct: 340 LFSNKVTELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQ- 398
Query: 759 HHANEKQSEDSSRQFDAHSHEQ--GEEHGNDK 848
EKQS+D S ++D H EQ GE+ GN+K
Sbjct: 399 -QPIEKQSDDCSGEWDTHMQEQPIGEDQGNEK 429
Score = 72 bits (175), Expect = 7e-013
Identities = 33/56 (58%), Positives = 44/56 (78%), Gaps = 4/56 (7%)
Frame = +3
Query: 915 YHHNNRNHVGT-PHNSSIGSSEQPGIGVGVARQPPGPRMPDGTRGFAMGRGRPVAV 1079
+HH++ + VGT P N+ + + EQPG+G +QPPGPRMPDGTRGF+MGRG+PV V
Sbjct: 474 HHHHHHHQVGTQPSNNPMNNMEQPGMG---KQQPPGPRMPDGTRGFSMGRGKPVMV 526
>TAIR9_protein||AT5G46250.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:18755388-18757723 FORWARD
Length = 341
Score = 101 bits (250), Expect = 1e-021
Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 13/177 (7%)
Frame = +3
Query: 282 LRNSSKLVVHEDGKKVRRQHPLTQSDMEELQSRIVVAENLPEDHCHQNLMKIFSAAGSVK 461
L+ SS LVV D KKV+R PL ++ + + V+ ENLPEDH ++N+ +IF AGS+K
Sbjct: 163 LKESSFLVVSADEKKVKRLSPL--PEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIK 220
Query: 462 TIRTCQPQTXXXXXXXXXXXXKADGMHFSNKLHAFVEYESPELAEKAVAELNDEGNWRSG 641
++ C P +LHAFVEYE+ E AEKA A LN+E +WR+G
Sbjct: 221 SVSICDPNAVEESEKGGKKEN-----FIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNG 275
Query: 642 LRVRLMLKRMSKPGQVRGKKGQDGELQLEEEDASTHEQIHHANEKQSEDSSRQFDAH 812
LRV+L+ + K Q R + + +++ T ++H + +R+ H
Sbjct: 276 LRVKLLEQAAGKFAQRRPARRE------VDKEKDTTGRVHDQTGGEKNKKTREHQNH 326
Score = 64 bits (154), Expect = 2e-010
Identities = 29/65 (44%), Positives = 42/65 (64%)
Frame = +2
Query: 95 DEATSKILNQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALVSSHSQLA 274
DE KI+ QVEYYFSD NL T L+ + ++ +GFVPIS +A+F K+K L H+ +
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160
Query: 275 TVIAE 289
+ + E
Sbjct: 161 SALKE 165
>TAIR9_protein||AT5G46250.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:18755388-18757723 FORWARD
Length = 341
Score = 101 bits (250), Expect = 1e-021
Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 13/177 (7%)
Frame = +3
Query: 282 LRNSSKLVVHEDGKKVRRQHPLTQSDMEELQSRIVVAENLPEDHCHQNLMKIFSAAGSVK 461
L+ SS LVV D KKV+R PL ++ + + V+ ENLPEDH ++N+ +IF AGS+K
Sbjct: 163 LKESSFLVVSADEKKVKRLSPL--PEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIK 220
Query: 462 TIRTCQPQTXXXXXXXXXXXXKADGMHFSNKLHAFVEYESPELAEKAVAELNDEGNWRSG 641
++ C P +LHAFVEYE+ E AEKAV LN+E +WR+G
Sbjct: 221 SVSICDPNAVEESEKGGKKEN-----FIRTRLHAFVEYETVEAAEKAVTTLNNEQDWRNG 275
Query: 642 LRVRLMLKRMSKPGQVRGKKGQDGELQLEEEDASTHEQIHHANEKQSEDSSRQFDAH 812
LRV+L+ + K Q R + + +++ T ++H + +R+ H
Sbjct: 276 LRVKLLEQAAGKFAQRRPARRE------VDKEKDTTGRVHDQTGGEKNKKTREHQNH 326
Score = 64 bits (154), Expect = 2e-010
Identities = 29/65 (44%), Positives = 42/65 (64%)
Frame = +2
Query: 95 DEATSKILNQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALVSSHSQLA 274
DE KI+ QVEYYFSD NL T L+ + ++ +GFVPIS +A+F K+K L H+ +
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160
Query: 275 TVIAE 289
+ + E
Sbjct: 161 SALKE 165
>TAIR9_protein||AT4G35890.1 | Symbols: | La domain-containing protein |
chr4:16997433-17000410 FORWARD
Length = 524
Score = 52 bits (122), Expect = 1e-006
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +2
Query: 110 KILNQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALVSSHSQLATVI 283
K+ Q++YYFSD NL T +L F+N EGFVP+ VVA FKK+ L + Q+ +
Sbjct: 372 KLHKQIQYYFSDENLITDIYLRGFMNN--EGFVPLRVVAGFKKVAELTDNIQQIVEAL 427
>TAIR9_protein||AT5G21160.1 | Symbols: | La domain-containing protein /
proline-rich family protein | chr5:7199191-7203879 REVERSE
Length = 827
Score = 49 bits (115), Expect = 7e-006
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Frame = +2
Query: 110 KILNQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKAL 250
++L QVEYYFSD NL +L+ + D EG+VP ++A FK++KA+
Sbjct: 281 RVLKQVEYYFSDENLENDHYLISLM--DEEGWVPTKIIAGFKRVKAM 325
>TAIR9_protein||AT1G79880.1 | Symbols: | La domain-containing protein |
chr1:30046222-30048336 REVERSE
Length = 400
Score = 49 bits (114), Expect = 9e-006
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +2
Query: 92 SDEATSKILNQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALV 253
++E K+L QVE+YFSD NL T L R + K +G V + +V SF +++ L+
Sbjct: 6 NEETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLL 59
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,287,271,046
Number of Sequences: 33410
Number of Extensions: 4287271046
Number of Successful Extensions: 235057511
Number of sequences better than 0.0: 0
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