BLASTX 7.6.2
Query= RU25233 /QuerySize=297
(296 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G47890.2 | Symbols: | zinc finger (B-box type... 75 9e-015
TAIR9_protein||AT2G47890.1 | Symbols: | zinc finger (B-box type... 75 9e-015
TAIR9_protein||AT4G15250.1 | Symbols: | zinc finger (B-box type... 64 1e-011
TAIR9_protein||AT1G28050.1 | Symbols: | zinc finger (B-box type... 63 3e-011
TAIR9_protein||AT2G33500.1 | Symbols: | zinc finger (B-box type... 62 6e-011
TAIR9_protein||AT2G33500.2 | Symbols: | zinc finger (B-box type... 62 6e-011
TAIR9_protein||AT3G21880.1 | Symbols: | zinc finger (B-box type... 59 5e-010
TAIR9_protein||AT3G07650.1 | Symbols: COL9 | COL9 (CONSTANS-LIKE... 59 5e-010
TAIR9_protein||AT3G07650.2 | Symbols: COL9 | COL9 (CONSTANS-LIKE... 59 5e-010
TAIR9_protein||AT3G07650.3 | Symbols: COL9 | COL9 (CONSTANS-LIKE... 59 5e-010
TAIR9_protein||AT3G07650.4 | Symbols: COL9 | COL9 (CONSTANS-LIKE... 59 5e-010
TAIR9_protein||AT5G48250.1 | Symbols: | zinc finger (B-box type... 59 5e-010
TAIR9_protein||AT5G24930.1 | Symbols: ATCOL4, COL4 | zinc finger... 55 7e-009
TAIR9_protein||AT1G68190.1 | Symbols: | zinc finger (B-box type... 53 3e-008
TAIR9_protein||AT2G24790.2 | Symbols: COL3, ATCOL3 | COL3 (CONST... 52 5e-008
TAIR9_protein||AT2G24790.1 | Symbols: COL3, ATCOL3 | COL3 (CONST... 52 5e-008
TAIR9_protein||AT5G15850.1 | Symbols: COL1, ATCOL1 | COL1 (const... 52 5e-008
TAIR9_protein||AT5G15840.1 | Symbols: CO, FG | CO (CONSTANS); tr... 52 6e-008
TAIR9_protein||AT5G15840.2 | Symbols: CO, FG | CO (CONSTANS); tr... 52 6e-008
TAIR9_protein||AT3G02380.1 | Symbols: COL2 | COL2 (constans-like... 49 5e-007
TAIR9_protein||AT4G27310.1 | Symbols: | zinc finger (B-box type... 49 5e-007
TAIR9_protein||AT5G57660.1 | Symbols: ATCOL5, COL5 | zinc finger... 48 1e-006
TAIR9_protein||AT4G15248.1 | Symbols: | zinc ion binding | chr4... 47 1e-006
>TAIR9_protein||AT2G47890.2 | Symbols: | zinc finger (B-box type) family
protein | chr2:19608245-19609036 FORWARD
Length = 238
Score = 75 bits (182), Expect = 9e-015
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +3
Query: 165 RLCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTRS 293
RLCDYC S+AL+YC+ADSAKLC +CDK+VH ANQLF KH RS
Sbjct: 11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRS 53
>TAIR9_protein||AT2G47890.1 | Symbols: | zinc finger (B-box type) family
protein | chr2:19608245-19609476 FORWARD
Length = 333
Score = 75 bits (182), Expect = 9e-015
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +3
Query: 165 RLCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTRS 293
RLCDYC S+AL+YC+ADSAKLC +CDK+VH ANQLF KH RS
Sbjct: 11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRS 53
>TAIR9_protein||AT4G15250.1 | Symbols: | zinc finger (B-box type) family
protein | chr4:8709942-8711106 REVERSE
Length = 331
Score = 64 bits (155), Expect = 1e-011
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +3
Query: 171 CDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTRS 293
CD+CG AL+YC++DSAKLC +CD VHSAN L +HTRS
Sbjct: 5 CDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRS 45
>TAIR9_protein||AT1G28050.1 | Symbols: | zinc finger (B-box type) family
protein | chr1:9775768-9777657 REVERSE
Length = 434
Score = 63 bits (152), Expect = 3e-011
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = +3
Query: 171 CDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTRSQ 296
CD+CG A+L+CRAD+AKLC CD++VH+AN L KH RSQ
Sbjct: 9 CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQ 50
>TAIR9_protein||AT2G33500.1 | Symbols: | zinc finger (B-box type) family
protein | chr2:14188159-14190046 REVERSE
Length = 403
Score = 62 bits (149), Expect = 6e-011
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 171 CDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTRSQ 296
C++CG A+L+CRAD+AKLC CD+ VHSAN L KH RSQ
Sbjct: 12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQ 53
>TAIR9_protein||AT2G33500.2 | Symbols: | zinc finger (B-box type) family
protein | chr2:14188159-14190046 REVERSE
Length = 402
Score = 62 bits (149), Expect = 6e-011
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 171 CDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTRSQ 296
C++CG A+L+CRAD+AKLC CD+ VHSAN L KH RSQ
Sbjct: 12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQ 53
>TAIR9_protein||AT3G21880.1 | Symbols: | zinc finger (B-box type) family
protein | chr3:7706748-7708093 FORWARD
Length = 365
Score = 59 bits (141), Expect = 5e-010
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +3
Query: 171 CDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTRS 293
CD+C S AL+YC++D AKLC +CD VHSAN L +H RS
Sbjct: 5 CDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRS 45
>TAIR9_protein||AT3G07650.1 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9);
transcription factor/ zinc ion binding | chr3:2442494-2443901 FORWARD
Length = 373
Score = 59 bits (141), Expect = 5e-010
Identities = 22/42 (52%), Positives = 33/42 (78%)
Frame = +3
Query: 168 LCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTRS 293
+CD+CG +++YCR+D+A LC SCD+ VHSAN L +H+R+
Sbjct: 4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRT 45
>TAIR9_protein||AT3G07650.2 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9);
transcription factor/ zinc ion binding | chr3:2442494-2443901 FORWARD
Length = 373
Score = 59 bits (141), Expect = 5e-010
Identities = 22/42 (52%), Positives = 33/42 (78%)
Frame = +3
Query: 168 LCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTRS 293
+CD+CG +++YCR+D+A LC SCD+ VHSAN L +H+R+
Sbjct: 4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRT 45
>TAIR9_protein||AT3G07650.3 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9);
transcription factor/ zinc ion binding | chr3:2442494-2443901 FORWARD
Length = 373
Score = 59 bits (141), Expect = 5e-010
Identities = 22/42 (52%), Positives = 33/42 (78%)
Frame = +3
Query: 168 LCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTRS 293
+CD+CG +++YCR+D+A LC SCD+ VHSAN L +H+R+
Sbjct: 4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRT 45
>TAIR9_protein||AT3G07650.4 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9);
transcription factor/ zinc ion binding | chr3:2442494-2443901 FORWARD
Length = 373
Score = 59 bits (141), Expect = 5e-010
Identities = 22/42 (52%), Positives = 33/42 (78%)
Frame = +3
Query: 168 LCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTRS 293
+CD+CG +++YCR+D+A LC SCD+ VHSAN L +H+R+
Sbjct: 4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRT 45
>TAIR9_protein||AT5G48250.1 | Symbols: | zinc finger (B-box type) family
protein | chr5:19561719-19563113 REVERSE
Length = 374
Score = 59 bits (141), Expect = 5e-010
Identities = 22/42 (52%), Positives = 33/42 (78%)
Frame = +3
Query: 168 LCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTRS 293
+CD+CG +++YCR+D+A LC SCD+ VHSAN L +H+R+
Sbjct: 4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRT 45
>TAIR9_protein||AT5G24930.1 | Symbols: ATCOL4, COL4 | zinc finger (B-box type)
family protein | chr5:8589325-8590949 FORWARD
Length = 407
Score = 55 bits (131), Expect = 7e-009
Identities = 23/42 (54%), Positives = 30/42 (71%)
Frame = +3
Query: 165 RLCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
+LCD C + A LYCR D+A LC SCD +VH+AN+L +H R
Sbjct: 48 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHAR 89
Score = 47 bits (110), Expect = 2e-006
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = +3
Query: 168 LCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
+C+ C + A + C+AD+A LC +CD+++HSAN L +H R
Sbjct: 92 MCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHER 132
>TAIR9_protein||AT1G68190.1 | Symbols: | zinc finger (B-box type) family
protein | chr1:25559384-25561004 FORWARD
Length = 357
Score = 53 bits (126), Expect = 3e-008
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +3
Query: 165 RLCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTRS 293
R+C++C A++YC AD+A LC +CD +VHSAN L +H R+
Sbjct: 12 RVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRT 54
>TAIR9_protein||AT2G24790.2 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3);
protein binding / transcription factor/ zinc ion binding |
chr2:10566959-10567621 FORWARD
Length = 221
Score = 52 bits (124), Expect = 5e-008
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +3
Query: 165 RLCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
RLCD C + A L+CRAD+A LC CD ++H+AN+L +H R
Sbjct: 6 RLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHER 47
Score = 48 bits (112), Expect = 1e-006
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +3
Query: 168 LCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
LC+ C + A + C+AD+A LC +CD+++HSAN L +H R
Sbjct: 50 LCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHER 90
>TAIR9_protein||AT2G24790.1 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3);
protein binding / transcription factor/ zinc ion binding |
chr2:10566959-10567946 FORWARD
Length = 295
Score = 52 bits (124), Expect = 5e-008
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +3
Query: 165 RLCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
RLCD C + A L+CRAD+A LC CD ++H+AN+L +H R
Sbjct: 6 RLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHER 47
Score = 48 bits (112), Expect = 1e-006
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +3
Query: 168 LCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
LC+ C + A + C+AD+A LC +CD+++HSAN L +H R
Sbjct: 50 LCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHER 90
>TAIR9_protein||AT5G15850.1 | Symbols: COL1, ATCOL1 | COL1 (constans-like 1);
transcription factor/ zinc ion binding | chr5:5176297-5177473 REVERSE
Length = 356
Score = 52 bits (124), Expect = 5e-008
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +3
Query: 171 CDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
CD C + +YCRADSA LC SCD +VH+AN+L +H R
Sbjct: 12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHER 51
Score = 50 bits (117), Expect = 3e-007
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +3
Query: 165 RLCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
R+C C + A +C+AD+A LC +CD E+HSAN L +H R
Sbjct: 53 RVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQR 94
>TAIR9_protein||AT5G15840.1 | Symbols: CO, FG | CO (CONSTANS); transcription
factor/ transcription regulator/ zinc ion binding |
chr5:5171343-5172697 REVERSE
Length = 374
Score = 52 bits (123), Expect = 6e-008
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +3
Query: 165 RLCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
R CD C + +YC ADSA LC SCD +VHSAN++ +H R
Sbjct: 18 RPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKR 59
Score = 48 bits (113), Expect = 9e-007
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +3
Query: 165 RLCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
R+C+ C + A C AD A LC +CD EVHSAN L +H R
Sbjct: 61 RVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQR 102
>TAIR9_protein||AT5G15840.2 | Symbols: CO, FG | CO (CONSTANS); transcription
factor/ transcription regulator/ zinc ion binding |
chr5:5171873-5172697 REVERSE
Length = 275
Score = 52 bits (123), Expect = 6e-008
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +3
Query: 165 RLCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
R CD C + +YC ADSA LC SCD +VHSAN++ +H R
Sbjct: 18 RPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKR 59
Score = 48 bits (113), Expect = 9e-007
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +3
Query: 165 RLCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
R+C+ C + A C AD A LC +CD EVHSAN L +H R
Sbjct: 61 RVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQR 102
>TAIR9_protein||AT3G02380.1 | Symbols: COL2 | COL2 (constans-like 2);
transcription factor/ zinc ion binding | chr3:487438-488624 REVERSE
Length = 348
Score = 49 bits (115), Expect = 5e-007
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +3
Query: 165 RLCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
R CD C + +YC ADSA LC +CD VH+AN++ +H R
Sbjct: 14 RACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHER 55
Score = 48 bits (113), Expect = 9e-007
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +3
Query: 165 RLCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
R+C C + A C+AD+A LC +CD E+HSAN L +H R
Sbjct: 57 RVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQR 98
>TAIR9_protein||AT4G27310.1 | Symbols: | zinc finger (B-box type) family
protein | chr4:13675853-13676616 FORWARD
Length = 224
Score = 49 bits (115), Expect = 5e-007
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 171 CDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
CD C +A +YC +D A LC+ CD +VH AN L KHTR
Sbjct: 5 CDLCN-GVARMYCESDQASLCWDCDGKVHGANFLVAKHTR 43
>TAIR9_protein||AT5G57660.1 | Symbols: ATCOL5, COL5 | zinc finger (B-box type)
family protein | chr5:23355573-23356729 FORWARD
Length = 356
Score = 48 bits (112), Expect = 1e-006
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +3
Query: 168 LCDYCGVSMALLYCRADSAKLCFSCDKEVHSANQLFIKHTR 290
+C+ C + A + C+AD+A LC SCD ++HSAN L +H R
Sbjct: 60 VCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHER 100
>TAIR9_protein||AT4G15248.1 | Symbols: | zinc ion binding |
chr4:8708881-8709234 FORWARD
Length = 118
Score = 47 bits (111), Expect = 1e-006
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +3
Query: 90 GFKEEDEPGHQNMGXXXXXXXXXXXRL-CDYCGVSMALLYCRADSAKLCFSCDKEVHSAN 266
GF++E+E N G + C+ CG + A +YC AD+A LC CD+ VHSAN
Sbjct: 4 GFEKEEERRSDNGGCQRLCTESHKAPVSCELCGEN-ATVYCEADAAFLCRKCDRWVHSAN 62
Query: 267 QLFIKHTR 290
L +H R
Sbjct: 63 FLARRHLR 70
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,347,376,321
Number of Sequences: 33410
Number of Extensions: 4347376321
Number of Successful Extensions: 240962520
Number of sequences better than 0.0: 0
|