BLASTX 7.6.2
Query= RU25531 /QuerySize=408
(407 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | U2AF3... 202 6e-053
TAIR9_protein||AT5G42820.1 | Symbols: ATU2AF35B, U2AF35B | U2AF3... 202 6e-053
TAIR9_protein||AT1G27650.1 | Symbols: ATU2AF35A | ATU2AF35A; RNA... 200 3e-052
TAIR9_protein||AT1G27650.2 | Symbols: ATU2AF35A | ATU2AF35A; RNA... 109 6e-025
TAIR9_protein||AT3G44785.1 | Symbols: | U2AF splicing factor su... 100 5e-022
TAIR9_protein||AT1G10320.1 | Symbols: | U2 snRNP auxiliary fact... 81 2e-016
>TAIR9_protein||AT5G42820.2 | Symbols: ATU2AF35B, U2AF35B | U2AF35B; RNA binding
/ nucleic acid binding / nucleotide binding / zinc ion binding |
chr5:17170445-17171296 REVERSE
Length = 284
Score = 202 bits (513), Expect = 6e-053
Identities = 95/128 (74%), Positives = 108/128 (84%), Gaps = 1/128 (0%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
EHLASIFGTEKDRVNCPFYFKI CRHGD+CSRLH +P+ISPTLLLSNMYQRPDM+T PG
Sbjct: 3 EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMIT-PG 61
Query: 208 VDPQGQALDPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQFREEEH 29
VDPQGQ LDP KIQD+ +K+G++ESLN+CDNLADHM+GNVYV F+EE+H
Sbjct: 62 VDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDH 121
Query: 28 AAAALQNL 5
AAAALQ L
Sbjct: 122 AAAALQAL 129
>TAIR9_protein||AT5G42820.1 | Symbols: ATU2AF35B, U2AF35B | U2AF35B; RNA binding
/ nucleic acid binding / nucleotide binding / zinc ion binding |
chr5:17170445-17171296 REVERSE
Length = 284
Score = 202 bits (513), Expect = 6e-053
Identities = 95/128 (74%), Positives = 108/128 (84%), Gaps = 1/128 (0%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
EHLASIFGTEKDRVNCPFYFKI CRHGD+CSRLH +P+ISPTLLLSNMYQRPDM+T PG
Sbjct: 3 EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMIT-PG 61
Query: 208 VDPQGQALDPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQFREEEH 29
VDPQGQ LDP KIQD+ +K+G++ESLN+CDNLADHM+GNVYV F+EE+H
Sbjct: 62 VDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDH 121
Query: 28 AAAALQNL 5
AAAALQ L
Sbjct: 122 AAAALQAL 129
>TAIR9_protein||AT1G27650.1 | Symbols: ATU2AF35A | ATU2AF35A; RNA binding /
nucleic acid binding / nucleotide binding / zinc ion binding |
chr1:9615152-9616042 FORWARD
Length = 297
Score = 200 bits (507), Expect = 3e-052
Identities = 96/128 (75%), Positives = 107/128 (83%), Gaps = 1/128 (0%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
EHLASIFGTEKDRVNCPFYFKI CRHGD+CSRLH +P+ISPTLLLSNMYQRPDM+T PG
Sbjct: 3 EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMIT-PG 61
Query: 208 VDPQGQALDPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQFREEEH 29
VD QGQ LDPRKIQ++ K+G+IESLNICDNLADHM+GNVYVQF+EE+
Sbjct: 62 VDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQ 121
Query: 28 AAAALQNL 5
AAAALQ L
Sbjct: 122 AAAALQAL 129
>TAIR9_protein||AT1G27650.2 | Symbols: ATU2AF35A | ATU2AF35A; RNA binding /
nucleic acid binding / nucleotide binding / zinc ion binding |
chr1:9615302-9616042 FORWARD
Length = 247
Score = 109 bits (272), Expect = 6e-025
Identities = 54/80 (67%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Frame = -2
Query: 244 MYQRPDMLTNPGVDPQGQALDPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMV 65
MYQRPDM+T PGVD QGQ LDPRKIQ++ K+G+IESLNICDNLADHM+
Sbjct: 1 MYQRPDMIT-PGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMI 59
Query: 64 GNVYVQFREEEHAAAALQNL 5
GNVYVQF+EE+ AAAALQ L
Sbjct: 60 GNVYVQFKEEDQAAAALQAL 79
>TAIR9_protein||AT3G44785.1 | Symbols: | U2AF splicing factor subunit, putative
/ U2 auxiliary factor 38 kDa subunit, putative | chr3:16328221-16328448
REVERSE
Length = 76
Score = 100 bits (247), Expect = 5e-022
Identities = 50/73 (68%), Positives = 59/73 (80%), Gaps = 3/73 (4%)
Frame = -2
Query: 388 EHLASIFGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPG 209
EHLASI+GTEKDRVNCPFYFKI CR+GD+CSRL+TKPSISPTLLLSN YQ+ +
Sbjct: 3 EHLASIYGTEKDRVNCPFYFKIGVCRNGDRCSRLYTKPSISPTLLLSNTYQQGRL--KQF 60
Query: 208 VDP-QGQALDPRK 173
+DP Q + DP+K
Sbjct: 61 LDPVQSREKDPKK 73
>TAIR9_protein||AT1G10320.1 | Symbols: | U2 snRNP auxiliary factor-related |
chr1:3384164-3388373 REVERSE
Length = 758
Score = 81 bits (198), Expect = 2e-016
Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Frame = -2
Query: 370 FGTEKDRVNCPFYFKICPCRHGDKCSRLHTKPSISPTLLLSNMYQRPDMLTNPGVDPQGQ 191
FGTE+D+ +CPF+ K CR G +CSR+H P+ S TLL+ NMY P + +G
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPGITWE---QDEGL 293
Query: 190 ALDPRKIQDNXXXXXXXXXXXXSKYGQIESLNICDNLADHMVGNVYVQFREEEHAAAALQ 11
+ + KYG++ + +C N + H+ GNVYV +R E A A Q
Sbjct: 294 EYTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQ 353
Query: 10 NL 5
++
Sbjct: 354 SI 355
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,403,461,098
Number of Sequences: 33410
Number of Extensions: 4403461098
Number of Successful Extensions: 241458331
Number of sequences better than 0.0: 0
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