BLASTX 7.6.2
Query= RU26017 /QuerySize=833
(832 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G43190.1 | Symbols: | polypyrimidine tract-bi... 372 2e-103
TAIR9_protein||AT1G43190.2 | Symbols: | polypyrimidine tract-bi... 372 2e-103
TAIR9_protein||AT1G43190.3 | Symbols: | polypyrimidine tract-bi... 363 1e-100
TAIR9_protein||AT3G01150.1 | Symbols: PTB, ATPTB1, PTB1 | PTB1 (... 149 2e-036
TAIR9_protein||AT5G53180.1 | Symbols: ATPTB2, PTB2 | PTB2 (POLYP... 119 3e-027
TAIR9_protein||AT5G53180.2 | Symbols: ATPTB2, PTB2 | PTB2 (POLYP... 101 6e-022
TAIR9_protein||AT3G01150.2 | Symbols: PTB | PTB1 (POLYPYRIMIDINE... 84 1e-016
>TAIR9_protein||AT1G43190.1 | Symbols: | polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein, putative |
chr1:16275432-16278185 REVERSE
Length = 433
Score = 372 bits (954), Expect = 2e-103
Identities = 184/230 (80%), Positives = 203/230 (88%), Gaps = 1/230 (0%)
Frame = +2
Query: 143 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDTAAAVSALQF 322
M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQAL+QMQD ++AVSALQF
Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60
Query: 323 YANVQPAVRGRNVYVQFSPHQELTTMYQNAQGRGDEPNRILLVTVHHMLYPITVEVLHQV 502
+ NVQP +RGRNVYVQFS HQELTT+ QN GR DEPNRILLVT+HHMLYPITV+VLHQV
Sbjct: 61 FTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 120
Query: 503 FFPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARTALQGRNIYDGCCQLDIQFSNLDEL 682
F P+GFVEK+VTFQKSAGFQALIQYQ +Q A +ARTALQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 121 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 180
Query: 683 QVNYNNERSRDFTNPNLPSEQKGKSPQPGYGDSGGMYGLQA-TGARAVGF 829
QVNYNN+RSRD+TNPNLP+EQKG+S P YGD+G Y A T A A F
Sbjct: 181 QVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAF 230
>TAIR9_protein||AT1G43190.2 | Symbols: | polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein, putative |
chr1:16275432-16278185 REVERSE
Length = 433
Score = 372 bits (954), Expect = 2e-103
Identities = 184/230 (80%), Positives = 203/230 (88%), Gaps = 1/230 (0%)
Frame = +2
Query: 143 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDTAAAVSALQF 322
M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQAL+QMQD ++AVSALQF
Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60
Query: 323 YANVQPAVRGRNVYVQFSPHQELTTMYQNAQGRGDEPNRILLVTVHHMLYPITVEVLHQV 502
+ NVQP +RGRNVYVQFS HQELTT+ QN GR DEPNRILLVT+HHMLYPITV+VLHQV
Sbjct: 61 FTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 120
Query: 503 FFPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARTALQGRNIYDGCCQLDIQFSNLDEL 682
F P+GFVEK+VTFQKSAGFQALIQYQ +Q A +ARTALQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 121 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 180
Query: 683 QVNYNNERSRDFTNPNLPSEQKGKSPQPGYGDSGGMYGLQA-TGARAVGF 829
QVNYNN+RSRD+TNPNLP+EQKG+S P YGD+G Y A T A A F
Sbjct: 181 QVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAF 230
>TAIR9_protein||AT1G43190.3 | Symbols: | polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein, putative |
chr1:16275432-16278185 REVERSE
Length = 431
Score = 363 bits (930), Expect = 1e-100
Identities = 182/230 (79%), Positives = 201/230 (87%), Gaps = 3/230 (1%)
Frame = +2
Query: 143 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDTAAAVSALQF 322
M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQAL+QMQD ++AVSALQF
Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60
Query: 323 YANVQPAVRGRNVYVQFSPHQELTTMYQNAQGRGDEPNRILLVTVHHMLYPITVEVLHQV 502
+ NVQP + RNVYVQFS HQELTT+ QN GR DEPNRILLVT+HHMLYPITV+VLHQV
Sbjct: 61 FTNVQPTI--RNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 118
Query: 503 FFPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARTALQGRNIYDGCCQLDIQFSNLDEL 682
F P+GFVEK+VTFQKSAGFQALIQYQ +Q A +ARTALQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 119 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 178
Query: 683 QVNYNNERSRDFTNPNLPSEQKGKSPQPGYGDSGGMYGLQA-TGARAVGF 829
QVNYNN+RSRD+TNPNLP+EQKG+S P YGD+G Y A T A A F
Sbjct: 179 QVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAF 228
>TAIR9_protein||AT3G01150.1 | Symbols: PTB, ATPTB1, PTB1 | PTB1 (POLYPYRIMIDINE
TRACT-BINDING PROTEIN 1); RNA binding / nucleic acid binding /
nucleotide binding | chr3:51732-54344 FORWARD
Length = 400
Score = 149 bits (376), Expect = 2e-036
Identities = 90/225 (40%), Positives = 134/225 (59%), Gaps = 18/225 (8%)
Frame = +2
Query: 152 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALIQMQDTAAAVSALQFY 325
PSKV+H+RN+ E E +L+ L + FG I TK + +NQA ++ D A+S + +Y
Sbjct: 15 PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYY 74
Query: 326 A-NVQPA-VRGRNVYVQFSPHQELTTMYQNAQGRGDEPNRILLVTVHHM-LYPITVEVLH 496
A + +PA +RG+ VY+Q+S E+ N Q GD P +LLVT + + ++++V+H
Sbjct: 75 ASSSEPAQIRGKTVYIQYSNRHEIV----NNQSPGDVPGNVLLVTFEGVESHEVSIDVIH 130
Query: 497 QVFFPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARTALQGRNI-------YDGCCQLD 655
VF GFV KI TF+K+AGFQAL+Q+ ++A AAR+AL GR+I + G C L
Sbjct: 131 LVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLR 190
Query: 656 IQFSNLDELQVNYNNERSRDFTNPNLPSEQKGK--SPQPGYGDSG 784
+ +S +L + + + RSRD+TNP LP Q S QP G G
Sbjct: 191 MSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADG 235
Score = 84 bits (206), Expect = 1e-016
Identities = 45/113 (39%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +2
Query: 425 DEPNRILLVTVHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAA 604
+ + +LL + +M Y +TV+VLH VF +G V+KI F+K+ QALIQY +A A
Sbjct: 239 ESQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMA 298
Query: 605 RTALQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPSEQKGKSP 760
+ AL+G IYD G C+L + +S +L V +++SRD+T P+L K P
Sbjct: 299 KEALEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKGP 351
>TAIR9_protein||AT5G53180.1 | Symbols: ATPTB2, PTB2 | PTB2 (POLYPYRIMIDINE
TRACT-BINDING PROTEIN 2); RNA binding / nucleic acid binding /
nucleotide binding | chr5:21568393-21571537 REVERSE
Length = 430
Score = 119 bits (297), Expect = 3e-027
Identities = 68/165 (41%), Positives = 106/165 (64%), Gaps = 9/165 (5%)
Frame = +2
Query: 152 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALIQMQDTAAAVSALQFY 325
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA I+ +D A+ + +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYY 75
Query: 326 A-NVQPA-VRGRNVYVQFSPHQELTTMYQNAQGRGDEPNRILLVTVH-HMLYPITVEVLH 496
A + +PA VRG+ VY+Q+S QE+ N + D +LLVT+ ++++VLH
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVVGNVLLVTIEGDDARMVSIDVLH 131
Query: 497 QVFFPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARTALQGRNI 631
VF GFV KI TF+K+AG+QAL+Q+ ++A AA+ AL GR+I
Sbjct: 132 LVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSI 176
Score = 101 bits (251), Expect = 6e-022
Identities = 59/138 (42%), Positives = 84/138 (60%), Gaps = 9/138 (6%)
Frame = +2
Query: 416 GRGDEP-NRILLVTVHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQSRQS 592
G+ EP + +LL ++ +M Y +T++VLH VF G V+KI F K+ G QALIQY Q+
Sbjct: 236 GKKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQT 295
Query: 593 AVAARTALQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP---SEQKGKSP 760
AV A+ AL+G IYD G C+L I +S +L + NN+RSRD+T PN P +Q ++P
Sbjct: 296 AVVAKEALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPVPMPQQPVQNP 355
Query: 761 QPG----YGDSGGMYGLQ 802
G Y +GG + Q
Sbjct: 356 YAGNPQQYHAAGGSHHQQ 373
>TAIR9_protein||AT5G53180.2 | Symbols: ATPTB2, PTB2 | PTB2 (POLYPYRIMIDINE
TRACT-BINDING PROTEIN 2); RNA binding / nucleotide binding |
chr5:21568393-21571081 REVERSE
Length = 330
Score = 101 bits (251), Expect = 6e-022
Identities = 59/138 (42%), Positives = 84/138 (60%), Gaps = 9/138 (6%)
Frame = +2
Query: 416 GRGDEP-NRILLVTVHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQSRQS 592
G+ EP + +LL ++ +M Y +T++VLH VF G V+KI F K+ G QALIQY Q+
Sbjct: 136 GKKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQT 195
Query: 593 AVAARTALQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLP---SEQKGKSP 760
AV A+ AL+G IYD G C+L I +S +L + NN+RSRD+T PN P +Q ++P
Sbjct: 196 AVVAKEALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPVPMPQQPVQNP 255
Query: 761 QPG----YGDSGGMYGLQ 802
G Y +GG + Q
Sbjct: 256 YAGNPQQYHAAGGSHHQQ 273
>TAIR9_protein||AT3G01150.2 | Symbols: PTB | PTB1 (POLYPYRIMIDINE TRACT-BINDING
PROTEIN 1); RNA binding / nucleic acid binding / nucleotide binding |
chr3:51732-54344 FORWARD
Length = 371
Score = 84 bits (206), Expect = 1e-016
Identities = 45/113 (39%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +2
Query: 425 DEPNRILLVTVHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAA 604
+ + +LL + +M Y +TV+VLH VF +G V+KI F+K+ QALIQY +A A
Sbjct: 210 ESQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMA 269
Query: 605 RTALQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPSEQKGKSP 760
+ AL+G IYD G C+L + +S +L V +++SRD+T P+L K P
Sbjct: 270 KEALEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKGP 322
Score = 69 bits (168), Expect = 2e-012
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 8/105 (7%)
Frame = +2
Query: 152 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALIQMQDTAAAVSALQFY 325
PSKV+H+RN+ E E +L+ L + FG I TK + +NQA ++ D A+S + +Y
Sbjct: 15 PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYY 74
Query: 326 A-NVQPA-VRGRNVYVQFSPHQELTTMYQNAQGRGDEPNRILLVT 454
A + +PA +RG+ VY+Q+S E+ N Q GD P +LLVT
Sbjct: 75 ASSSEPAQIRGKTVYIQYSNRHEIV----NNQSPGDVPGNVLLVT 115
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,432,020,814
Number of Sequences: 33410
Number of Extensions: 4432020814
Number of Successful Extensions: 241540594
Number of sequences better than 0.0: 0
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