BLASTX 7.6.2
Query= RU26054 /QuerySize=709
(708 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G40430.1 | Symbols: | FUNCTIONS IN: molecular... 112 3e-025
TAIR9_protein||AT2G40430.2 | Symbols: | FUNCTIONS IN: molecular... 112 3e-025
>TAIR9_protein||AT2G40430.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tumor
suppressor protein Gltscr2 (InterPro:IPR011211), P60-like
(InterPro:IPR011687); Has 601 Blast hits to 544 proteins in 148
species: Archae - 0; Bacteria - 22; Metazoa - 201; Fungi - 103; Plants
- 32; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink). |
chr2:16879466-16882365 REVERSE
Length = 443
Score = 112 bits (278), Expect = 3e-025
Identities = 53/73 (72%), Positives = 64/73 (87%)
Frame = +3
Query: 129 NISTEDIQDFFEQSTKDALSGGNLSQAPDEALFFIDNSKDLSVKRKIEKHREKVLHIDSM 308
NIS+EDI+DFFE++T+DALSGGNLS AP E LF +D S DL VKRKIEKHRE+VL +DS+
Sbjct: 18 NISSEDIEDFFEKTTRDALSGGNLSAAPSEDLFHVDKSHDLPVKRKIEKHRERVLRVDSI 77
Query: 309 LQKNPFVKAVPSS 347
L+KNPFV+ VPSS
Sbjct: 78 LKKNPFVQLVPSS 90
Score = 101 bits (251), Expect = 5e-022
Identities = 49/88 (55%), Positives = 59/88 (67%), Gaps = 3/88 (3%)
Frame = +2
Query: 449 LWSDKGGDNHVV---KKMMNPSPIPAVEVEPPGCSYSPTDGSHQEALAHAPADEMQKVYR 619
LW D H K NPS I AVE+E PGCSY+PT SHQ+ LA A A EMQKVY+
Sbjct: 124 LWGDDSKGEHESNPRKIFKNPSIISAVEIEHPGCSYNPTTESHQDMLAEAVAQEMQKVYK 183
Query: 620 NELGPEPVPLTVPGETIDEEEMYFIEAD 703
ELGP PVPLT+ G+T+ E+E YF++ D
Sbjct: 184 TELGPAPVPLTIEGDTLSEDERYFLDVD 211
>TAIR9_protein||AT2G40430.2 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tumor
suppressor protein Gltscr2 (InterPro:IPR011211), P60-like
(InterPro:IPR011687); Has 608 Blast hits to 551 proteins in 148
species: Archae - 0; Bacteria - 22; Metazoa - 203; Fungi - 106; Plants
- 34; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink). |
chr2:16879527-16882365 REVERSE
Length = 450
Score = 112 bits (278), Expect = 3e-025
Identities = 53/73 (72%), Positives = 64/73 (87%)
Frame = +3
Query: 129 NISTEDIQDFFEQSTKDALSGGNLSQAPDEALFFIDNSKDLSVKRKIEKHREKVLHIDSM 308
NIS+EDI+DFFE++T+DALSGGNLS AP E LF +D S DL VKRKIEKHRE+VL +DS+
Sbjct: 18 NISSEDIEDFFEKTTRDALSGGNLSAAPSEDLFHVDKSHDLPVKRKIEKHRERVLRVDSI 77
Query: 309 LQKNPFVKAVPSS 347
L+KNPFV+ VPSS
Sbjct: 78 LKKNPFVQLVPSS 90
Score = 101 bits (251), Expect = 5e-022
Identities = 49/88 (55%), Positives = 59/88 (67%), Gaps = 3/88 (3%)
Frame = +2
Query: 449 LWSDKGGDNHVV---KKMMNPSPIPAVEVEPPGCSYSPTDGSHQEALAHAPADEMQKVYR 619
LW D H K NPS I AVE+E PGCSY+PT SHQ+ LA A A EMQKVY+
Sbjct: 124 LWGDDSKGEHESNPRKIFKNPSIISAVEIEHPGCSYNPTTESHQDMLAEAVAQEMQKVYK 183
Query: 620 NELGPEPVPLTVPGETIDEEEMYFIEAD 703
ELGP PVPLT+ G+T+ E+E YF++ D
Sbjct: 184 TELGPAPVPLTIEGDTLSEDERYFLDVD 211
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,460,487,890
Number of Sequences: 33410
Number of Extensions: 4460487890
Number of Successful Extensions: 241606193
Number of sequences better than 0.0: 0
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