BLASTX 7.6.2
Query= RU26228 /QuerySize=312
(311 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G10200.1 | Symbols: WLIM1 | WLIM1; transcripti... 172 4e-044
TAIR9_protein||AT2G39900.1 | Symbols: | LIM domain-containing p... 126 4e-030
TAIR9_protein||AT3G55770.1 | Symbols: | LIM domain-containing p... 119 3e-028
TAIR9_protein||AT3G55770.2 | Symbols: | LIM domain-containing p... 119 3e-028
TAIR9_protein||AT3G55770.3 | Symbols: | LIM domain-containing p... 119 3e-028
TAIR9_protein||AT3G55770.4 | Symbols: | LIM domain-containing p... 119 3e-028
TAIR9_protein||AT3G55770.5 | Symbols: | LIM domain-containing p... 119 3e-028
TAIR9_protein||AT1G01780.1 | Symbols: | LIM domain-containing p... 116 3e-027
TAIR9_protein||AT2G45800.1 | Symbols: | LIM domain-containing p... 112 4e-026
TAIR9_protein||AT2G45800.2 | Symbols: | LIM domain-containing p... 110 2e-025
TAIR9_protein||AT3G61230.1 | Symbols: | LIM domain-containing p... 107 2e-024
TAIR9_protein||AT3G55770.6 | Symbols: | LIM domain-containing p... 84 1e-017
>TAIR9_protein||AT1G10200.1 | Symbols: WLIM1 | WLIM1; transcription factor/ zinc
ion binding | chr1:3346677-3347763 REVERSE
Length = 191
Score = 172 bits (435), Expect = 4e-044
Identities = 82/105 (78%), Positives = 91/105 (86%), Gaps = 3/105 (2%)
Frame = -1
Query: 311 TLKLSNFCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKILKPERPTIENEN--NKAVSN 138
TLKLSN+ SFEGVLYCRPH+DQ FKRTGSL+KSFEGTPKI KP+RP +E E VSN
Sbjct: 43 TLKLSNYNSFEGVLYCRPHFDQNFKRTGSLEKSFEGTPKIGKPDRP-LEGERPAGTKVSN 101
Query: 137 MFVGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTHGGCTISP 3
MF GT++KCVGC+KTVYPIEKVSVNGT YH+ CFKCTHGGCTISP
Sbjct: 102 MFGGTREKCVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISP 146
Score = 50 bits (118), Expect = 2e-007
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = -1
Query: 134 FVGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTH 24
F GT KC+ C+KTVY ++K++ + YH+ CF+C H
Sbjct: 3 FAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHH 39
>TAIR9_protein||AT2G39900.1 | Symbols: | LIM domain-containing protein |
chr2:16659136-16660267 FORWARD
Length = 201
Score = 126 bits (314), Expect = 4e-030
Identities = 58/103 (56%), Positives = 74/103 (71%), Gaps = 2/103 (1%)
Frame = -1
Query: 308 LKLSNFCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKILKPERPTIE-NENNKAVSNMF 132
L+LSN+ S EGV+YCRPH++QLFK +GS K+F+ K L ++PT E N ++ MF
Sbjct: 44 LQLSNYSSMEGVVYCRPHFEQLFKESGSFSKNFQSPAKPL-TDKPTPELNRTPSRLAGMF 102
Query: 131 VGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTHGGCTISP 3
GT+DKC C KTVYPIEKV+V YH+ CFKC+HGGC ISP
Sbjct: 103 SGTQDKCATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISP 145
Score = 61 bits (146), Expect = 1e-010
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = -1
Query: 134 FVGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTH 24
F GT+ KC CEKTVYP+E +S +G SYH+ CFKC+H
Sbjct: 3 FTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSH 39
>TAIR9_protein||AT3G55770.1 | Symbols: | LIM domain-containing protein |
chr3:20703799-20705115 FORWARD
Length = 200
Score = 119 bits (298), Expect = 3e-028
Identities = 52/102 (50%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Frame = -1
Query: 308 LKLSNFCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKILKPERPTIENENNKAVSNMFV 129
L+LS++ S EGVLYC+PH++QLFK +GS +K+F+ K P + ++ V+ F
Sbjct: 44 LQLSSYSSMEGVLYCKPHFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSR-VAGRFS 102
Query: 128 GTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTHGGCTISP 3
GT++KC C KTVYPIEKV+V +YH+ CFKC+HGGC ISP
Sbjct: 103 GTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISP 144
Score = 59 bits (140), Expect = 6e-010
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -1
Query: 134 FVGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTH 24
F GT+ KC CEKTVY +E +S +G YH+ CFKCTH
Sbjct: 3 FTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTH 39
>TAIR9_protein||AT3G55770.2 | Symbols: | LIM domain-containing protein |
chr3:20703799-20705115 FORWARD
Length = 200
Score = 119 bits (298), Expect = 3e-028
Identities = 52/102 (50%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Frame = -1
Query: 308 LKLSNFCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKILKPERPTIENENNKAVSNMFV 129
L+LS++ S EGVLYC+PH++QLFK +GS +K+F+ K P + ++ V+ F
Sbjct: 44 LQLSSYSSMEGVLYCKPHFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSR-VAGRFS 102
Query: 128 GTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTHGGCTISP 3
GT++KC C KTVYPIEKV+V +YH+ CFKC+HGGC ISP
Sbjct: 103 GTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISP 144
Score = 59 bits (140), Expect = 6e-010
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -1
Query: 134 FVGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTH 24
F GT+ KC CEKTVY +E +S +G YH+ CFKCTH
Sbjct: 3 FTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTH 39
>TAIR9_protein||AT3G55770.3 | Symbols: | LIM domain-containing protein |
chr3:20703799-20705115 FORWARD
Length = 200
Score = 119 bits (298), Expect = 3e-028
Identities = 52/102 (50%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Frame = -1
Query: 308 LKLSNFCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKILKPERPTIENENNKAVSNMFV 129
L+LS++ S EGVLYC+PH++QLFK +GS +K+F+ K P + ++ V+ F
Sbjct: 44 LQLSSYSSMEGVLYCKPHFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSR-VAGRFS 102
Query: 128 GTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTHGGCTISP 3
GT++KC C KTVYPIEKV+V +YH+ CFKC+HGGC ISP
Sbjct: 103 GTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISP 144
Score = 59 bits (140), Expect = 6e-010
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -1
Query: 134 FVGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTH 24
F GT+ KC CEKTVY +E +S +G YH+ CFKCTH
Sbjct: 3 FTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTH 39
>TAIR9_protein||AT3G55770.4 | Symbols: | LIM domain-containing protein |
chr3:20703799-20705115 FORWARD
Length = 200
Score = 119 bits (298), Expect = 3e-028
Identities = 52/102 (50%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Frame = -1
Query: 308 LKLSNFCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKILKPERPTIENENNKAVSNMFV 129
L+LS++ S EGVLYC+PH++QLFK +GS +K+F+ K P + ++ V+ F
Sbjct: 44 LQLSSYSSMEGVLYCKPHFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSR-VAGRFS 102
Query: 128 GTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTHGGCTISP 3
GT++KC C KTVYPIEKV+V +YH+ CFKC+HGGC ISP
Sbjct: 103 GTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISP 144
Score = 59 bits (140), Expect = 6e-010
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -1
Query: 134 FVGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTH 24
F GT+ KC CEKTVY +E +S +G YH+ CFKCTH
Sbjct: 3 FTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTH 39
>TAIR9_protein||AT3G55770.5 | Symbols: | LIM domain-containing protein |
chr3:20703799-20705115 FORWARD
Length = 200
Score = 119 bits (298), Expect = 3e-028
Identities = 52/102 (50%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Frame = -1
Query: 308 LKLSNFCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKILKPERPTIENENNKAVSNMFV 129
L+LS++ S EGVLYC+PH++QLFK +GS +K+F+ K P + ++ V+ F
Sbjct: 44 LQLSSYSSMEGVLYCKPHFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSR-VAGRFS 102
Query: 128 GTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTHGGCTISP 3
GT++KC C KTVYPIEKV+V +YH+ CFKC+HGGC ISP
Sbjct: 103 GTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISP 144
Score = 59 bits (140), Expect = 6e-010
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -1
Query: 134 FVGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTH 24
F GT+ KC CEKTVY +E +S +G YH+ CFKCTH
Sbjct: 3 FTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTH 39
>TAIR9_protein||AT1G01780.1 | Symbols: | LIM domain-containing protein |
chr1:282919-284082 FORWARD
Length = 206
Score = 116 bits (289), Expect = 3e-027
Identities = 48/102 (47%), Positives = 74/102 (72%), Gaps = 5/102 (4%)
Frame = -1
Query: 311 TLKLSNFCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKILKPERPTIENENNKAVSNMF 132
TL++SN+ S +GVLYC+ H++QLFK +G+ K+F+ K E+P + +K +S++F
Sbjct: 43 TLQMSNYSSMDGVLYCKTHFEQLFKESGNFSKNFQPG----KTEKPELTRTPSK-ISSIF 97
Query: 131 VGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTHGGCTIS 6
GT+DKC CEKTVYP+EK+ + G +H+ CF+C HGGCT++
Sbjct: 98 CGTQDKCAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLT 139
Score = 55 bits (130), Expect = 9e-009
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = -1
Query: 134 FVGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTH 24
F GT DKC C+KTVY ++ +S+ G YH+ CF+CTH
Sbjct: 3 FTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTH 39
>TAIR9_protein||AT2G45800.1 | Symbols: | LIM domain-containing protein |
chr2:18858153-18859007 REVERSE
Length = 227
Score = 112 bits (280), Expect = 4e-026
Identities = 49/103 (47%), Positives = 71/103 (68%), Gaps = 5/103 (4%)
Frame = -1
Query: 311 TLKLSNFCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKILKPERPTIE-NENNKAVSNM 135
TL +SN+ S +GVLYC+PH++QLFK +G+ K+F+ K E+P +S+
Sbjct: 43 TLVISNYSSMDGVLYCKPHFEQLFKESGNYSKNFQAG----KTEKPNDHLTRTPSKLSSF 98
Query: 134 FVGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTHGGCTIS 6
F GT+DKC C+KTVYP+EKV++ G SYH+ CF+CTH GC ++
Sbjct: 99 FSGTQDKCATCKKTVYPLEKVTMEGESYHKTCFRCTHSGCPLT 141
Score = 54 bits (129), Expect = 1e-008
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = -1
Query: 134 FVGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTH 24
F GT DKC C+KTVY ++ +++ G +YH+ CF+CTH
Sbjct: 3 FTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTH 39
>TAIR9_protein||AT2G45800.2 | Symbols: | LIM domain-containing protein |
chr2:18858153-18858823 REVERSE
Length = 196
Score = 110 bits (274), Expect = 2e-025
Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 5/101 (4%)
Frame = -1
Query: 305 KLSNFCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKILKPERPTIE-NENNKAVSNMFV 129
++SN+ S +GVLYC+PH++QLFK +G+ K+F+ K E+P +S+ F
Sbjct: 14 QISNYSSMDGVLYCKPHFEQLFKESGNYSKNFQAG----KTEKPNDHLTRTPSKLSSFFS 69
Query: 128 GTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTHGGCTIS 6
GT+DKC C+KTVYP+EKV++ G SYH+ CF+CTH GC ++
Sbjct: 70 GTQDKCATCKKTVYPLEKVTMEGESYHKTCFRCTHSGCPLT 110
>TAIR9_protein||AT3G61230.1 | Symbols: | LIM domain-containing protein |
chr3:22664601-22665503 REVERSE
Length = 214
Score = 107 bits (265), Expect = 2e-024
Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 9/105 (8%)
Frame = -1
Query: 311 TLKLSNFCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKILKPERPTIENENNKA---VS 141
TL + N+ S +GVLYC+ H++QLFK +G+ K+F+ K K N+ KA +S
Sbjct: 44 TLVICNYSSMDGVLYCKTHFEQLFKESGNFSKNFQTAGKTEK------SNDATKAPNRLS 97
Query: 140 NMFVGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTHGGCTIS 6
+ F GT+DKC C+KTVYP+EK+++ G SYH+ CF+C H GC ++
Sbjct: 98 SFFSGTQDKCAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLT 142
Score = 52 bits (124), Expect = 4e-008
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = -1
Query: 134 FVGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTHGGCTI 9
F GT DKC C+KTVY ++ +++ G YH+ CF+C+H T+
Sbjct: 4 FTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTL 45
>TAIR9_protein||AT3G55770.6 | Symbols: | LIM domain-containing protein |
chr3:20703799-20704614 FORWARD
Length = 128
Score = 84 bits (206), Expect = 1e-017
Identities = 39/81 (48%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Frame = -1
Query: 308 LKLSNFCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKILKPERPTIENENNKAVSNMFV 129
L+LS++ S EGVLYC+PH++QLFK +GS +K+F+ K P + ++ V+ F
Sbjct: 44 LQLSSYSSMEGVLYCKPHFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSR-VAGRFS 102
Query: 128 GTKDKCVGCEKTVYPIEKVSV 66
GT++KC C KTVYPIEKV V
Sbjct: 103 GTQEKCATCSKTVYPIEKVYV 123
Score = 59 bits (140), Expect = 6e-010
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -1
Query: 134 FVGTKDKCVGCEKTVYPIEKVSVNGTSYHRRCFKCTH 24
F GT+ KC CEKTVY +E +S +G YH+ CFKCTH
Sbjct: 3 FTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTH 39
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,488,596,032
Number of Sequences: 33410
Number of Extensions: 4488596032
Number of Successful Extensions: 241660877
Number of sequences better than 0.0: 0
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