BLASTX 7.6.2
Query= RU26578 /QuerySize=972
(971 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G80230.1 | Symbols: | cytochrome c oxidase fa... 200 2e-051
TAIR9_protein||AT3G15640.1 | Symbols: | cytochrome c oxidase fa... 196 2e-050
TAIR9_protein||AT3G15640.2 | Symbols: | cytochrome c oxidase fa... 193 2e-049
TAIR9_protein||AT1G52710.1 | Symbols: | cytochrome c oxidase-re... 129 2e-030
>TAIR9_protein||AT1G80230.1 | Symbols: | cytochrome c oxidase family protein |
chr1:30169784-30170999 REVERSE
Length = 172
Score = 200 bits (506), Expect = 2e-051
Identities = 90/115 (78%), Positives = 101/115 (87%), Gaps = 1/115 (0%)
Frame = +2
Query: 299 SVDTSVKKKVEEIMPIATGHELEELAAEVQGKDILEIDHPEGPFGTKEAPAVVKSYYDKR 478
+ DT+VKK+VE++MPIATGHE EEL AE++G+ + +ID PEGPFGTKEAPAVVKSYYD R
Sbjct: 58 AADTAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMR 117
Query: 479 IVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGSPD-HSDDHH* 640
IVGCPGGEGEDEHDVVWFWLEKGK ECPVC+QYF LEVVGPGG PD H DDHH*
Sbjct: 118 IVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVVGPGGPPDGHGDDHH* 172
>TAIR9_protein||AT3G15640.1 | Symbols: | cytochrome c oxidase family protein |
chr3:5299273-5301371 FORWARD
Length = 177
Score = 196 bits (498), Expect = 2e-050
Identities = 92/126 (73%), Positives = 105/126 (83%), Gaps = 5/126 (3%)
Frame = +2
Query: 272 LPRYFSTTPSVDTSVKKKVEEIMPIATGHELEELAAEVQGKDILEIDHPEGPFGTKEAPA 451
+PR FS + SV+T KKVE++MPIATGHE EEL AE++G+ + +ID PEGPFGTKEAPA
Sbjct: 51 IPRRFS-SDSVETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPA 109
Query: 452 VVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGSP----D 619
+VKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGK ECPVC+QYF LEVVGPGG P D
Sbjct: 110 IVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGD 169
Query: 620 HSDDHH 637
D+HH
Sbjct: 170 EDDEHH 175
>TAIR9_protein||AT3G15640.2 | Symbols: | cytochrome c oxidase family protein |
chr3:5299273-5301371 FORWARD
Length = 176
Score = 193 bits (488), Expect = 2e-049
Identities = 90/126 (71%), Positives = 103/126 (81%), Gaps = 6/126 (4%)
Frame = +2
Query: 272 LPRYFSTTPSVDTSVKKKVEEIMPIATGHELEELAAEVQGKDILEIDHPEGPFGTKEAPA 451
+PR FS+ +T KKVE++MPIATGHE EEL AE++G+ + +ID PEGPFGTKEAPA
Sbjct: 51 IPRRFSS--DSETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPA 108
Query: 452 VVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVLEVVGPGGSP----D 619
+VKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGK ECPVC+QYF LEVVGPGG P D
Sbjct: 109 IVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGD 168
Query: 620 HSDDHH 637
D+HH
Sbjct: 169 EDDEHH 174
>TAIR9_protein||AT1G52710.1 | Symbols: | cytochrome c oxidase-related |
chr1:19638627-19640112 REVERSE
Length = 91
Score = 129 bits (324), Expect = 2e-030
Identities = 59/89 (66%), Positives = 67/89 (75%), Gaps = 2/89 (2%)
Frame = +2
Query: 371 LAAEVQGKDILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGK 550
L E G+ +L+IDHPE PFGTKE+PAVV+SY+DKR +GC GGEGED HDVVWFWL+KGK
Sbjct: 4 LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63
Query: 551 PHECPVCSQYFVLEVVGPGGSPDHSDDHH 637
ECPVCSQYF E P G D D HH
Sbjct: 64 SFECPVCSQYF--EHGPPDGHGDDEDHHH 90
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,546,126,115
Number of Sequences: 33410
Number of Extensions: 4546126115
Number of Successful Extensions: 246676772
Number of sequences better than 0.0: 0
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