BLASTX 7.6.2
Query= RU26580 /QuerySize=1374
(1373 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G15340.1 | Symbols: MBD10 | MBD10; DNA binding... 162 5e-040
TAIR9_protein||AT3G15790.1 | Symbols: MBD11, ATMBD11 | MBD11; DN... 144 2e-034
>TAIR9_protein||AT1G15340.1 | Symbols: MBD10 | MBD10; DNA binding / methyl-CpG
binding | chr1:5275895-5277474 REVERSE
Length = 385
Score = 162 bits (409), Expect = 5e-040
Identities = 85/206 (41%), Positives = 121/206 (58%), Gaps = 12/206 (5%)
Frame = -2
Query: 1249 DEVVAVEFPAPPAWKKKILPKKGVTPRKNDVTFISPTGEEINNKKQLEQYLKSHPGNPAM 1070
DE+V++E PAP +WKK PK+ TPRK ++ F++PTGEEI+++KQLEQYLK+HPGNP +
Sbjct: 5 DELVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVI 64
Query: 1069 SEFDWSTGETPRRSSRISEKVK-STPPPENEPPXXXXXXXXXXXDNKVETTDAEHGT--- 902
SEF+W+TGETPRRSSRIS+KVK +TP P+ EP DNK E
Sbjct: 65 SEFEWTTGETPRRSSRISQKVKATTPTPDKEPLLKKRRSSLTKKDNKEAAEKNEEAAVKE 124
Query: 901 -----NDTEMKDAEVAEKKDGEAEKQVENGGKAPEETDQXXXXXXXXXXXXPEDGKETQT 737
D + ++AE ++K+ E ++ K E ++ E GKE QT
Sbjct: 125 NMDVDKDGKTENAEAEKEKEKEGVTEIAEAEKENNEGEKTEAEKVNKEGEKTEAGKEGQT 184
Query: 736 HVMETQGEEKDEKSNSVASEEQPAEV 659
+ E + E++ EK+ +E + AEV
Sbjct: 185 EIAEAEKEKEGEKAE---AENKEAEV 207
>TAIR9_protein||AT3G15790.1 | Symbols: MBD11, ATMBD11 | MBD11; DNA binding /
methyl-CpG binding | chr3:5343209-5344386 FORWARD
Length = 255
Score = 144 bits (362), Expect = 2e-034
Identities = 82/211 (38%), Positives = 113/211 (53%), Gaps = 10/211 (4%)
Frame = -2
Query: 1249 DEVVAVEFPAPPAWKKKILPKKGVTPRKNDVTFISPTGEEINNKKQLEQYLKSHPGNPAM 1070
+EVV+VE PAP +WKK P K + +K +V F++PTGEEI+N+KQLEQYLKSHPGNPA+
Sbjct: 5 EEVVSVELPAPSSWKKLFYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGNPAI 64
Query: 1069 SEFDWSTGETPRRSSRISEKVKSTPPPENEPPXXXXXXXXXXXDNKVETTDAEHG----- 905
+EFDW+T TPRRS+RISEK K+TP P+ EPP E +E G
Sbjct: 65 AEFDWTTSGTPRRSARISEKTKATPSPDKEPPKKRGRTKSPVSKKDAEGEKSEGGGEENS 124
Query: 904 -TNDTEMKDAE-VAEKK---DGEAEKQVENGGKAPEETDQXXXXXXXXXXXXPEDGKETQ 740
DTEM E +AE + D + E A E E KE
Sbjct: 125 HVKDTEMNPPEGIAENENVTDKNGSGETERVNDAKENIVAEETPNAAPVQEEGESMKEKA 184
Query: 739 THVMETQGEEKDEKSNSVASEEQPAEVALAT 647
++ + +E D++ ++ + E+ +V T
Sbjct: 185 LDSVDDKSKETDKEKDTGSIEKNSVDVEKKT 215
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,546,126,115
Number of Sequences: 33410
Number of Extensions: 4546126115
Number of Successful Extensions: 246676772
Number of sequences better than 0.0: 0
|