BLASTX 7.6.2
Query= RU26586 /QuerySize=331
(330 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G06770.1 | Symbols: | KH domain-containing pr... 69 5e-013
TAIR9_protein||AT3G12130.1 | Symbols: | KH domain-containing pr... 66 3e-012
TAIR9_protein||AT1G32360.1 | Symbols: | zinc finger (CCCH-type)... 46 3e-006
TAIR9_protein||AT3G19360.1 | Symbols: | zinc finger (CCCH-type)... 45 7e-006
>TAIR9_protein||AT5G06770.1 | Symbols: | KH domain-containing protein / zinc
finger (CCCH type) family protein | chr5:2090937-2092787 REVERSE
Length = 241
Score = 69 bits (167), Expect = 5e-013
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = -3
Query: 328 QIQQASALVRELIQSVLMSGPNKTXXXXXXXXXXXXXSNYRTKLCDNFAKGTCTFGERCH 149
QI AS +VRELI + K SNY+TK+CD ++KG CT+G+RCH
Sbjct: 169 QINVASGMVRELIGR--LGSVKKPQGIGGPEGKPHPGSNYKTKICDRYSKGNCTYGDRCH 226
Query: 148 FAHGAAELRKPGV 110
FAHG +ELR+ G+
Sbjct: 227 FAHGESELRRSGI 239
>TAIR9_protein||AT3G12130.1 | Symbols: | KH domain-containing protein / zinc
finger (CCCH type) family protein | chr3:3864486-3866406 REVERSE
Length = 249
Score = 66 bits (160), Expect = 3e-012
Identities = 25/36 (69%), Positives = 32/36 (88%)
Frame = -3
Query: 217 SNYRTKLCDNFAKGTCTFGERCHFAHGAAELRKPGV 110
SN++TK+C+ F+KG CTFG+RCHFAHG AELRK G+
Sbjct: 212 SNFKTKICERFSKGNCTFGDRCHFAHGEAELRKSGI 247
>TAIR9_protein||AT1G32360.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr1:11673325-11675162 FORWARD
Length = 385
Score = 46 bits (108), Expect = 3e-006
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Frame = -3
Query: 217 SNYRTKLCDNF-AKGTCTFGERCHFAHGAAELRKPGV*GLVQ 95
SN++T++C+ + G C FG +CHFAHGAAEL + G GLV+
Sbjct: 259 SNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGG-GLVE 299
>TAIR9_protein||AT3G19360.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr3:6707544-6708864 FORWARD
Length = 387
Score = 45 bits (105), Expect = 7e-006
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = -3
Query: 211 YRTKLCDNFAKGTCTFGERCHFAHGAAELRKP 116
Y+T++C F GTC GE C+FAHG +LR+P
Sbjct: 105 YKTRMCAKFRAGTCRNGELCNFAHGIEDLRQP 136
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,546,126,115
Number of Sequences: 33410
Number of Extensions: 4546126115
Number of Successful Extensions: 246676772
Number of sequences better than 0.0: 0
|