BLASTX 7.6.2
Query= RU26724 /QuerySize=874
(873 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 132 3e-031
TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 132 3e-031
TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 132 3e-031
TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 122 4e-028
TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 122 4e-028
TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 119 4e-027
TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 104 1e-022
TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 104 1e-022
TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 104 1e-022
TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 100 1e-021
TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 100 1e-021
TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 100 1e-021
TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 |... 90 1e-018
TAIR9_protein||AT4G23800.1 | Symbols: | high mobility group (HM... 60 2e-009
TAIR9_protein||AT5G23420.1 | Symbols: HMGB6 | HMGB6; transcripti... 60 2e-009
TAIR9_protein||AT2G34450.1 | Symbols: | high mobility group (HM... 57 2e-008
TAIR9_protein||AT2G34450.2 | Symbols: | high mobility group (HM... 53 2e-007
TAIR9_protein||AT4G11080.1 | Symbols: | high mobility group (HM... 48 8e-006
>TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 145
Score = 132 bits (331), Expect = 3e-031
Identities = 66/113 (58%), Positives = 77/113 (68%)
Frame = +2
Query: 125 MKGGKSNTKKADSELAVNKKPAKVTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKEN 304
MKG KS T+ S+L+V KKPAK K A KDPNKPKRPASAFFVFME+FR+ F KEN
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 305 PNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEG 463
P N +S++EKAPYVAK++KRKVEYEK +KAYN K EG
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG 113
>TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 143
Score = 132 bits (331), Expect = 3e-031
Identities = 66/113 (58%), Positives = 77/113 (68%)
Frame = +2
Query: 125 MKGGKSNTKKADSELAVNKKPAKVTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKEN 304
MKG KS T+ S+L+V KKPAK K A KDPNKPKRPASAFFVFME+FR+ F KEN
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 305 PNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEG 463
P N +S++EKAPYVAK++KRKVEYEK +KAYN K EG
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG 113
>TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 144
Score = 132 bits (331), Expect = 3e-031
Identities = 66/113 (58%), Positives = 77/113 (68%)
Frame = +2
Query: 125 MKGGKSNTKKADSELAVNKKPAKVTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKEN 304
MKG KS T+ S+L+V KKPAK K A KDPNKPKRPASAFFVFME+FR+ F KEN
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 305 PNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEG 463
P N +S++EKAPYVAK++KRKVEYEK +KAYN K EG
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEG 113
>TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181174 FORWARD
Length = 142
Score = 122 bits (304), Expect = 4e-028
Identities = 62/113 (54%), Positives = 76/113 (67%), Gaps = 3/113 (2%)
Frame = +2
Query: 125 MKGGKSNTKKADSELAVNKKPAKVTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKEN 304
MKG KS + ++L+V KKPAK +K A KDPNKPKRP+SAFFVFME+FR + +E+
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAK---GAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57
Query: 305 PNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEG 463
P N +S++EKAPYVAK+DKRKVEYEK MKAYN K EG
Sbjct: 58 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG 110
>TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181170 FORWARD
Length = 141
Score = 122 bits (304), Expect = 4e-028
Identities = 62/113 (54%), Positives = 76/113 (67%), Gaps = 3/113 (2%)
Frame = +2
Query: 125 MKGGKSNTKKADSELAVNKKPAKVTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKEN 304
MKG KS + ++L+V KKPAK +K A KDPNKPKRP+SAFFVFME+FR + +E+
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAK---GAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57
Query: 305 PNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEG 463
P N +S++EKAPYVAK+DKRKVEYEK MKAYN K EG
Sbjct: 58 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEG 110
>TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181193 FORWARD
Length = 148
Score = 119 bits (296), Expect = 4e-027
Identities = 60/109 (55%), Positives = 74/109 (67%), Gaps = 3/109 (2%)
Frame = +2
Query: 125 MKGGKSNTKKADSELAVNKKPAKVTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKEN 304
MKG KS + ++L+V KKPAK +K A KDPNKPKRP+SAFFVFME+FR + +E+
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAK---GAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57
Query: 305 PNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMK 451
P N +S++EKAPYVAK+DKRKVEYEK MKAYN K
Sbjct: 58 PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106
>TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 104 bits (257), Expect = 1e-022
Identities = 52/113 (46%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Frame = +2
Query: 125 MKGGKSNTKKADSELAVNKKPAKVTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKEN 304
MKGG+S KA++ + + +A KK KDPN+PKRP SAFFVF+E+FRK+FN N
Sbjct: 1 MKGGES---KAEATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLAN 57
Query: 305 PNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEG 463
PNN M++ +KAPYVAK++ RK EY K ++ YN+K A G
Sbjct: 58 PNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASG 110
>TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 104 bits (257), Expect = 1e-022
Identities = 52/113 (46%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Frame = +2
Query: 125 MKGGKSNTKKADSELAVNKKPAKVTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKEN 304
MKGG+S KA++ + + +A KK KDPN+PKRP SAFFVF+E+FRK+FN N
Sbjct: 1 MKGGES---KAEATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLAN 57
Query: 305 PNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEG 463
PNN M++ +KAPYVAK++ RK EY K ++ YN+K A G
Sbjct: 58 PNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASG 110
>TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 135
Score = 104 bits (257), Expect = 1e-022
Identities = 52/113 (46%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Frame = +2
Query: 125 MKGGKSNTKKADSELAVNKKPAKVTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKEN 304
MKGG+S KA++ + + +A KK KDPN+PKRP SAFFVF+E+FRK+FN N
Sbjct: 1 MKGGES---KAEATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLAN 57
Query: 305 PNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEG 463
PNN M++ +KAPYVAK++ RK EY K ++ YN+K A G
Sbjct: 58 PNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASG 110
>TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 100 bits (248), Expect = 1e-021
Identities = 55/107 (51%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Frame = +2
Query: 149 KKADSELAVNKKPAK-VTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXX 325
+K A +KP K TR KKA KDPNKPKR SAFFVF+E+FR F KENPN
Sbjct: 23 RKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVS 82
Query: 326 XXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEGN 466
MS+AEKAPY K+ KRK EYEK M AYN EG+
Sbjct: 83 AVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGS 129
>TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 186
Score = 100 bits (248), Expect = 1e-021
Identities = 55/107 (51%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Frame = +2
Query: 149 KKADSELAVNKKPAK-VTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXX 325
+K A +KP K TR KKA KDPNKPKR SAFFVF+E+FR F KENPN
Sbjct: 23 RKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVS 82
Query: 326 XXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEGN 466
MS+AEKAPY K+ KRK EYEK M AYN EG+
Sbjct: 83 AVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGS 129
>TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 100 bits (248), Expect = 1e-021
Identities = 55/107 (51%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Frame = +2
Query: 149 KKADSELAVNKKPAK-VTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXX 325
+K A +KP K TR KKA KDPNKPKR SAFFVF+E+FR F KENPN
Sbjct: 23 RKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVS 82
Query: 326 XXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEGN 466
MS+AEKAPY K+ KRK EYEK M AYN EG+
Sbjct: 83 AVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGS 129
>TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 | HMGB5 (HIGH
MOBILITY GROUP B 5); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor |
chr4:16887363-16888184 REVERSE
Length = 126
Score = 90 bits (222), Expect = 1e-018
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Frame = +2
Query: 137 KSNTKKADSELAVNKKPAKVTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKENPNNX 316
K N + +S ++ + + KK KDPN+PK+P S FFVF+++FRK+FN NP+N
Sbjct: 2 KDNQTEVESRSTDDRLKVRGNKVGKK-TKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNK 60
Query: 317 XXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEGN 466
M+E E+AP+VAKS +K EY M+ YNM+ A GN
Sbjct: 61 SVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNMELANGN 110
>TAIR9_protein||AT4G23800.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr4:12390228-12392516 FORWARD
Length = 457
Score = 60 bits (144), Expect = 2e-009
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Frame = +2
Query: 182 KPAKVTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXXXXXXXXXXXXXX 361
K K T+ K DPNKPK+PAS++F+F ++ RK+ +E P
Sbjct: 361 KKEKATKKKKNENVDPNKPKKPASSYFLFSKDERKKLTEERP-GTNNATVTALISLKWKE 419
Query: 362 MSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQA 457
+SE EK Y K+ K Y+K ++AYN K A
Sbjct: 420 LSEEEKQVYNGKAAKLMEAYKKEVEAYNKKSA 451
>TAIR9_protein||AT5G23420.1 | Symbols: HMGB6 | HMGB6; transcription factor |
chr5:7888712-7890111 REVERSE
Length = 242
Score = 60 bits (144), Expect = 2e-009
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Frame = +2
Query: 137 KSNTKKADSELAVNKKPAKVTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKENPNNX 316
K KK + K K T KK+ NKPKRP +AFF+FM +FRK F E+ N
Sbjct: 82 KPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH-NGS 140
Query: 317 XXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAE 460
++E EK Y+ K+ + K EY K +++ + + E
Sbjct: 141 LAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEEE 188
>TAIR9_protein||AT2G34450.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr2:14527918-14529448 REVERSE
Length = 152
Score = 57 bits (135), Expect = 2e-008
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Frame = +2
Query: 119 IAMKGGKSNTKKADSELAVNKKPAKVTRASKKAVKDPNK-PKRPASAFFVFMEEFRKQFN 295
+A+K + + L +KP T KK VK K PK+PA+AFF F+++FRKQ+
Sbjct: 25 LAVKSSEGARRSTRLRLQPLRKPK--TSPKKKPVKLQTKMPKKPATAFFFFLDDFRKQYQ 82
Query: 296 KENPNNXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEG 463
+ENP+ M+ EK Y + +++ E+ + M Y + G
Sbjct: 83 EENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYTKRMESG 138
>TAIR9_protein||AT2G34450.2 | Symbols: | high mobility group (HMG1/2) family
protein | chr2:14527918-14529448 REVERSE
Length = 153
Score = 53 bits (126), Expect = 2e-007
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Frame = +2
Query: 119 IAMKGGKSNTKKADSELAVNKKPAKVTRASKKAVKDPNK-PKRPASAFFVFMEEFRKQFN 295
+A+K + + L +KP T KK VK K PK+PA+AFF F+++FRKQ+
Sbjct: 25 LAVKSSEGARRSTRLRLQPLRKPK--TSPKKKPVKLQTKMPKKPATAFFFFLDDFRKQYQ 82
Query: 296 KENPN-NXXXXXXXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYNMKQAEG 463
+ENP+ M+ EK Y + +++ E+ + M Y + G
Sbjct: 83 EENPDVKSMREVIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYTKRMESG 139
>TAIR9_protein||AT4G11080.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr4:6760898-6763272 REVERSE
Length = 447
Score = 48 bits (112), Expect = 8e-006
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Frame = +2
Query: 149 KKADSELAVNKKPAKVTRASKKAVKDPNKPKRPASAFFVFMEEFRKQFNKENPNNXXXXX 328
+K D+ + K+ AK + ++ DPNKPK+P S++F+F ++ RK +E+P
Sbjct: 345 EKTDNIIKKTKETAKNKKKNENV--DPNKPKKPTSSYFLFCKDARKSVLEEHP-GINNST 401
Query: 329 XXXXXXXXXXXMSEAEKAPYVAKSDKRKVEYEKLMKAYN 445
+ E EK Y +K+ + Y+K ++ YN
Sbjct: 402 VTAHISLKWMELGEEEKQVYNSKAAELMEAYKKEVEEYN 440
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,546,126,115
Number of Sequences: 33410
Number of Extensions: 4546126115
Number of Successful Extensions: 246676772
Number of sequences better than 0.0: 0
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