BLASTX 7.6.2
Query= RU26818 /QuerySize=1657
(1656 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G16180.1 | Symbols: | TMS membrane family pro... 440 1e-123
TAIR9_protein||AT3G06170.1 | Symbols: | TMS membrane family pro... 329 6e-090
TAIR9_protein||AT2G33205.1 | Symbols: | FUNCTIONS IN: molecular... 87 3e-017
TAIR9_protein||AT4G13345.1 | Symbols: MEE55 | MEE55 (maternal ef... 86 5e-017
TAIR9_protein||AT4G13345.2 | Symbols: MEE55 | MEE55 (maternal ef... 86 5e-017
TAIR9_protein||AT3G24460.1 | Symbols: | TMS membrane family pro... 86 6e-017
>TAIR9_protein||AT1G16180.1 | Symbols: | TMS membrane family protein / tumour
differentially expressed (TDE) family protein | chr1:5540905-5542670
FORWARD
Length = 413
Score = 440 bits (1131), Expect = 1e-123
Identities = 215/302 (71%), Positives = 232/302 (76%), Gaps = 4/302 (1%)
Frame = +3
Query: 483 GWMMKVTCWLLLVIFSLFFIPNGIISFYETIAKFGSGXXXXXXXXXXXXXXHGWNDKWVG 662
GWMMK+ CW +LVIF +FF+PN IISFYE+++KFG+G HGWND WVG
Sbjct: 115 GWMMKIICWCILVIF-MFFLPNEIISFYESMSKFGAGFFLLVQVVLLLDFVHGWNDTWVG 173
Query: 663 YDEQFWYVALFVVSLVCYLATFVFSGLLFHLFTPSGHDCGLNTFFIVMTLIFVFVFLIVA 842
YDEQFWY AL VVSLVCYLATFVFSG LFH FTPSGHDCGLNTFFI+MTLIFVFVF IV
Sbjct: 174 YDEQFWYAALLVVSLVCYLATFVFSGFLFHWFTPSGHDCGLNTFFIIMTLIFVFVFAIVV 233
Query: 843 LHPTVSGSILPASVVSVYCTYLCYSALASEPRDYECNGLHKHSKAXXXXXXXXXXXXXXX 1022
LHPTV GSILPASV+S+YC YLCYS LASEPRDYECNGLH HSKA
Sbjct: 234 LHPTVGGSILPASVISLYCMYLCYSGLASEPRDYECNGLHNHSKAVSTGTMTIGLLTTVL 293
Query: 1023 XXXYSAVRAGXXXXXXXXXXXXRAGAGKPLLPLD-KPEEHEENEKAKSVSYSYAFFHIIF 1199
YSAVRAG R A KPLLP+D K EE EE E K VSYSYAFFHIIF
Sbjct: 294 SVVYSAVRAGSSTTLLSPPDSPR--AEKPLLPIDGKAEEKEEKENKKPVSYSYAFFHIIF 351
Query: 1200 SLASMYSAMLLTGWSTSVGESGKLIDVGWPSVWVRVMTSWATAGLYIWSLLAPILFPERE 1379
SLASMYSAMLLTGWSTSVGESGKL+DVGWPSVWVRV+TSWATAGL+IWSL+APILFP+RE
Sbjct: 352 SLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRVVTSWATAGLFIWSLVAPILFPDRE 411
Query: 1380 F* 1385
F*
Sbjct: 412 F* 413
Score = 135 bits (338), Expect = 1e-031
Identities = 62/77 (80%), Positives = 70/77 (90%)
Frame = +1
Query: 244 YCFLFAFSLIASWILRDVAPPLLEKIPWINHFHQIPYREWFETEAVLRVSLGNFLFFTIL 423
YC LFA SLI SWILR+VA PL+EK+PWINHFH+ P REWFET+AVLRVSLGNFLFF+IL
Sbjct: 35 YCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPDREWFETDAVLRVSLGNFLFFSIL 94
Query: 424 SVVMIGVKSQKDPRDSI 474
SV+MIGVK+QKDPRD I
Sbjct: 95 SVMMIGVKNQKDPRDGI 111
>TAIR9_protein||AT3G06170.1 | Symbols: | TMS membrane family protein / tumour
differentially expressed (TDE) family protein | chr3:1867520-1869738
FORWARD
Length = 410
Score = 329 bits (841), Expect = 6e-090
Identities = 157/300 (52%), Positives = 200/300 (66%), Gaps = 3/300 (1%)
Frame = +3
Query: 483 GWMMKVTCWLLLVIFSLFFIPNGIISFYETIAKFGSGXXXXXXXXXXXXXXHGWNDKWVG 662
GW +K+ W LLV+ +FF+PN I+S Y T++KFG+G H WND WV
Sbjct: 112 GWGLKMIVWFLLVVL-MFFVPNVIVSLYGTLSKFGAGAFLLVQVVLLLDATHNWNDSWVE 170
Query: 663 YDEQFWYVALFVVSLVCYLATFVFSGLLFHLFTPSGHDCGLNTFFIVMTLIFVFVFLIVA 842
DE+ WY+AL V+S+VCY+AT+ FSG+LF F PSG DCGLN FFIVM +I FVF I+A
Sbjct: 171 KDEKKWYIALLVISIVCYIATYTFSGILFIWFNPSGQDCGLNVFFIVMPMILAFVFAIIA 230
Query: 843 LHPTVSGSILPASVVSVYCTYLCYSALASEPRDYECNGLHKHSKAXXXXXXXXXXXXXXX 1022
LHP V+GS+LPASV+SVYC Y+CY+ L+SEP DY CNGL+K SKA
Sbjct: 231 LHPAVNGSLLPASVISVYCAYVCYTGLSSEPHDYVCNGLNK-SKAVNASTLILGMLTTVL 289
Query: 1023 XXXYSAVRAGXXXXXXXXXXXXRAGAGKPLLPLDKPEEHEENEKAKSVSYSYAFFHIIFS 1202
YSA+RAG R+G LL + + +A+ VSYSY+FFHIIF+
Sbjct: 290 SVLYSALRAGSSTTFLSPPSSPRSGVKDALLGDPEDGKKSGEAEARPVSYSYSFFHIIFA 349
Query: 1203 LASMYSAMLLTGWSTSVGESGKLIDVGWPSVWVRVMTSWATAGLYIWSLLAPILFPEREF 1382
LASMY+AMLL+GW+ S ES LIDVGW SVWV++ T W TAGLYIW+L+AP++ P+REF
Sbjct: 350 LASMYAAMLLSGWTDS-SESATLIDVGWTSVWVKICTGWVTAGLYIWTLIAPLILPDREF 408
Score = 96 bits (236), Expect = 8e-020
Identities = 45/76 (59%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Frame = +1
Query: 244 YCFLFAFSLIASWILRDVAPPLLEKIPWINHFHQIPYREWFETEAVLRVSLGNFLFFTIL 423
YC LF SL+ SWILR+ PLLEK+PWIN +EW++ +AVLRVS GNFLFF I
Sbjct: 33 YCGLFGASLVVSWILRETGAPLLEKLPWINTSDSYT-KEWYQQQAVLRVSFGNFLFFAIY 91
Query: 424 SVVMIGVKSQKDPRDS 471
+++MIGVK Q D RDS
Sbjct: 92 ALIMIGVKDQNDRRDS 107
>TAIR9_protein||AT2G33205.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane;
CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially
expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana
protein match is: MEE55 (maternal effect embryo arrest 55)
(TAIR:AT4G13345.1); Has 602 Blast hits to 593 proteins in 136 species:
Archae - 0; Bacteria - 0; Metazoa - 380; Fungi - 90; Plants - 84;
Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). |
chr2:14070987-14073211 REVERSE
Length = 423
Score = 87 bits (214), Expect = 3e-017
Identities = 37/93 (39%), Positives = 54/93 (58%)
Frame = +3
Query: 1140 EENEKAKSVSYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLIDVGWPSVWVRVMTSW 1319
+E ++ + YSY FFH++FSL +MY AML W+ S IDVGW S WV+++ W
Sbjct: 330 DEAKEEDDIPYSYGFFHLVFSLGAMYFAMLFISWNLSHSTEKWSIDVGWTSTWVKIVNEW 389
Query: 1320 ATAGLYIWSLLAPILFPEREF*NPATTNLEIRK 1418
A +Y+W L+API+ R P T E+ +
Sbjct: 390 FAAAIYLWKLIAPIVRQHRVHEQPQPTAAEVHR 422
Score = 80 bits (197), Expect = 3e-015
Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Frame = +3
Query: 486 WMMKVTCWLLLVIFSLFFIPNGIISFYETIAKFGSGXXXXXXXXXXXXXXHGWNDKWVGY 665
W+ K L++V+ + FFIP I Y IA+ G+G WN+ W+
Sbjct: 133 WIFKFFL-LVIVMVASFFIPQLYIQIYGEIARVGAGIFLGLQLVSVIEFITWWNNYWMPQ 191
Query: 666 DEQFWYVAL-FVVSLVCYLATFVFSGLLFHLFTPSGHDCGLNTFFIVMTLIFVFVFLIVA 842
++ + V+S+V Y+ + ++++ + S CGLN FFI T+I + V ++++
Sbjct: 192 NQSKQSCSFGLVMSIVFYIGSVCGIAVMYYFYGAS-TACGLNIFFISWTVILLIVMMVIS 250
Query: 843 LHPTVSG-SILPASVVSVYCTYLCYSALASEPRDYECNGLHKHS 971
LH V +L + +++ Y +LC+SA+ SEP +CN ++S
Sbjct: 251 LHSKVKNRGLLSSGIMASYIVFLCWSAIRSEPSHTKCNAHTQNS 294
>TAIR9_protein||AT4G13345.1 | Symbols: MEE55 | MEE55 (maternal effect embryo
arrest 55) | chr4:7767292-7769426 FORWARD
Length = 395
Score = 86 bits (212), Expect = 5e-017
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Frame = +3
Query: 1125 KPEEHEENEKAKSVSYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLIDVGWPSVWVR 1304
K E HEE+ ++ Y Y FFH +F+ +MY AMLL GW+ IDVGW S WVR
Sbjct: 312 KDENHEED----AIPYGYGFFHFVFATGAMYFAMLLVGWNIHHSMKKWTIDVGWTSTWVR 367
Query: 1305 VMTSWATAGLYIWSLLAPILFPERE 1379
++ W G+YIW L+AP++ R+
Sbjct: 368 IVNEWLAVGVYIWMLVAPMVLKSRQ 392
>TAIR9_protein||AT4G13345.2 | Symbols: MEE55 | MEE55 (maternal effect embryo
arrest 55) | chr4:7767292-7769426 FORWARD
Length = 395
Score = 86 bits (212), Expect = 5e-017
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Frame = +3
Query: 1125 KPEEHEENEKAKSVSYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLIDVGWPSVWVR 1304
K E HEE+ ++ Y Y FFH +F+ +MY AMLL GW+ IDVGW S WVR
Sbjct: 312 KDENHEED----AIPYGYGFFHFVFATGAMYFAMLLVGWNIHHSMKKWTIDVGWTSTWVR 367
Query: 1305 VMTSWATAGLYIWSLLAPILFPERE 1379
++ W G+YIW L+AP++ R+
Sbjct: 368 IVNEWLAVGVYIWMLVAPMVLKSRQ 392
>TAIR9_protein||AT3G24460.1 | Symbols: | TMS membrane family protein / tumour
differentially expressed (TDE) family protein | chr3:8886160-8889717
REVERSE
Length = 410
Score = 86 bits (211), Expect = 6e-017
Identities = 38/84 (45%), Positives = 48/84 (57%)
Frame = +3
Query: 1125 KPEEHEENEKAKSVSYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLIDVGWPSVWVR 1304
K E +E E V Y Y FFH +F+ +MY AMLL GW+T IDVGW S WVR
Sbjct: 319 KDENDQEEEAEDDVPYGYGFFHFVFATGAMYFAMLLIGWNTHHPMKKWTIDVGWTSTWVR 378
Query: 1305 VMTSWATAGLYIWSLLAPILFPER 1376
V+ W +YIW L+AP++ R
Sbjct: 379 VVNEWLAVCVYIWMLVAPLILKSR 402
Score = 73 bits (178), Expect = 4e-013
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 3/157 (1%)
Frame = +3
Query: 486 WMMKVTCWLLLVIFSLFFIPNGIISFYETIAKFGSGXXXXXXXXXXXXXXHGWNDKWVGY 665
W +K+ W L I F +P+ II Y IA FG+G N+ +
Sbjct: 123 WFVKLIMWPALTIIP-FLLPSSIIHLYGEIAHFGAGVFLLIQLISVISFIQWLNECYQSQ 181
Query: 666 -DEQFWYVALFVVSLVCYLATFVFSGLLFHLFTPSGHDCGLNTFFIVMTLIFVFVFLIVA 842
D + V + ++S Y V L++ + P C LN FFI TL + + +A
Sbjct: 182 KDAERCRVYVMLLSTTSYTVCIVGVILMYIWYAPDS-SCLLNIFFITWTLFLIQLMTSIA 240
Query: 843 LHPTVSGSILPASVVSVYCTYLCYSALASEPRDYECN 953
LHP V+ L +++ +Y ++C+ A+ SEP CN
Sbjct: 241 LHPKVNAGYLTPALMGLYVVFICWCAIRSEPVGESCN 277
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,604,738,094
Number of Sequences: 33410
Number of Extensions: 4604738094
Number of Successful Extensions: 252423256
Number of sequences better than 0.0: 0
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