BLASTX 7.6.2
Query= RU26902 /QuerySize=504
(503 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 114 4e-026
TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 114 4e-026
TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 111 3e-025
TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 109 2e-024
TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 109 2e-024
TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 109 2e-024
TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 100 7e-022
TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 100 7e-022
TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 100 7e-022
TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 90 6e-019
TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 90 6e-019
TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 90 6e-019
TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 |... 72 2e-013
TAIR9_protein||AT5G23420.1 | Symbols: HMGB6 | HMGB6; transcripti... 60 6e-010
TAIR9_protein||AT2G34450.1 | Symbols: | high mobility group (HM... 59 1e-009
TAIR9_protein||AT2G34450.2 | Symbols: | high mobility group (HM... 55 2e-008
TAIR9_protein||AT4G23800.1 | Symbols: | high mobility group (HM... 55 2e-008
TAIR9_protein||AT4G11080.1 | Symbols: | high mobility group (HM... 52 1e-007
>TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181174 FORWARD
Length = 142
Score = 114 bits (284), Expect = 4e-026
Identities = 54/67 (80%), Positives = 58/67 (86%)
Frame = +3
Query: 273 VFMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVY 452
VFME+FR YK+EHP NKSVAAVGKAGGEKWKSLSD+EKAPY AKA+KRKVEY KNM Y
Sbjct: 44 VFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAY 103
Query: 453 NKKQAEG 473
NKK EG
Sbjct: 104 NKKLEEG 110
>TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181170 FORWARD
Length = 141
Score = 114 bits (284), Expect = 4e-026
Identities = 54/67 (80%), Positives = 58/67 (86%)
Frame = +3
Query: 273 VFMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVY 452
VFME+FR YK+EHP NKSVAAVGKAGGEKWKSLSD+EKAPY AKA+KRKVEY KNM Y
Sbjct: 44 VFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAY 103
Query: 453 NKKQAEG 473
NKK EG
Sbjct: 104 NKKLEEG 110
>TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181193 FORWARD
Length = 148
Score = 111 bits (276), Expect = 3e-025
Identities = 52/63 (82%), Positives = 56/63 (88%)
Frame = +3
Query: 273 VFMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVY 452
VFME+FR YK+EHP NKSVAAVGKAGGEKWKSLSD+EKAPY AKA+KRKVEY KNM Y
Sbjct: 44 VFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAY 103
Query: 453 NKK 461
NKK
Sbjct: 104 NKK 106
>TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 145
Score = 109 bits (270), Expect = 2e-024
Identities = 51/67 (76%), Positives = 57/67 (85%)
Frame = +3
Query: 273 VFMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVY 452
VFME+FRE +KKE+P NKSVA VGKA G+KWKSLSD+EKAPY AKAEKRKVEY KN+ Y
Sbjct: 47 VFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAY 106
Query: 453 NKKQAEG 473
NKK EG
Sbjct: 107 NKKLEEG 113
>TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 143
Score = 109 bits (270), Expect = 2e-024
Identities = 51/67 (76%), Positives = 57/67 (85%)
Frame = +3
Query: 273 VFMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVY 452
VFME+FRE +KKE+P NKSVA VGKA G+KWKSLSD+EKAPY AKAEKRKVEY KN+ Y
Sbjct: 47 VFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAY 106
Query: 453 NKKQAEG 473
NKK EG
Sbjct: 107 NKKLEEG 113
>TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 144
Score = 109 bits (270), Expect = 2e-024
Identities = 51/67 (76%), Positives = 57/67 (85%)
Frame = +3
Query: 273 VFMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVY 452
VFME+FRE +KKE+P NKSVA VGKA G+KWKSLSD+EKAPY AKAEKRKVEY KN+ Y
Sbjct: 47 VFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAY 106
Query: 453 NKKQAEG 473
NKK EG
Sbjct: 107 NKKLEEG 113
>TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 100 bits (247), Expect = 7e-022
Identities = 46/75 (61%), Positives = 56/75 (74%)
Frame = +3
Query: 255 ACECLLVFMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYN 434
A VF+E+FR +KKE+PN K+V+AVGKAGG+KWKS+S AEKAPY+ KA KRK EY
Sbjct: 56 APSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYE 115
Query: 435 KNMDVYNKKQAEGDN 479
K MD YNK EG +
Sbjct: 116 KQMDAYNKNLEEGSD 130
>TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 186
Score = 100 bits (247), Expect = 7e-022
Identities = 46/75 (61%), Positives = 56/75 (74%)
Frame = +3
Query: 255 ACECLLVFMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYN 434
A VF+E+FR +KKE+PN K+V+AVGKAGG+KWKS+S AEKAPY+ KA KRK EY
Sbjct: 56 APSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYE 115
Query: 435 KNMDVYNKKQAEGDN 479
K MD YNK EG +
Sbjct: 116 KQMDAYNKNLEEGSD 130
>TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 100 bits (247), Expect = 7e-022
Identities = 46/75 (61%), Positives = 56/75 (74%)
Frame = +3
Query: 255 ACECLLVFMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYN 434
A VF+E+FR +KKE+PN K+V+AVGKAGG+KWKS+S AEKAPY+ KA KRK EY
Sbjct: 56 APSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYE 115
Query: 435 KNMDVYNKKQAEGDN 479
K MD YNK EG +
Sbjct: 116 KQMDAYNKNLEEGSD 130
>TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 90 bits (222), Expect = 6e-019
Identities = 44/95 (46%), Positives = 60/95 (63%)
Frame = +3
Query: 195 KRWGEQASQEGWERSKQA*EACECLLVFMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSL 374
K G +A ++ + Q VF+E+FR+++ +PNNKSVA VGKA G +WK++
Sbjct: 18 KTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAM 77
Query: 375 SDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEGDN 479
+D +KAPY AKAE RK EY KN+ YN K A G N
Sbjct: 78 TDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN 112
>TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 90 bits (222), Expect = 6e-019
Identities = 44/95 (46%), Positives = 60/95 (63%)
Frame = +3
Query: 195 KRWGEQASQEGWERSKQA*EACECLLVFMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSL 374
K G +A ++ + Q VF+E+FR+++ +PNNKSVA VGKA G +WK++
Sbjct: 18 KTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAM 77
Query: 375 SDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEGDN 479
+D +KAPY AKAE RK EY KN+ YN K A G N
Sbjct: 78 TDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN 112
>TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 135
Score = 90 bits (222), Expect = 6e-019
Identities = 44/95 (46%), Positives = 60/95 (63%)
Frame = +3
Query: 195 KRWGEQASQEGWERSKQA*EACECLLVFMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSL 374
K G +A ++ + Q VF+E+FR+++ +PNNKSVA VGKA G +WK++
Sbjct: 18 KTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAM 77
Query: 375 SDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAEGDN 479
+D +KAPY AKAE RK EY KN+ YN K A G N
Sbjct: 78 TDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN 112
>TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 | HMGB5 (HIGH
MOBILITY GROUP B 5); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor |
chr4:16887363-16888184 REVERSE
Length = 126
Score = 72 bits (175), Expect = 2e-013
Identities = 29/68 (42%), Positives = 50/68 (73%)
Frame = +3
Query: 273 VFMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVY 452
VF+++FR+++ +P+NKSV VG+A G+KWK++++ E+AP+ AK++ +K EY M Y
Sbjct: 43 VFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQY 102
Query: 453 NKKQAEGD 476
N + A G+
Sbjct: 103 NMELANGN 110
>TAIR9_protein||AT5G23420.1 | Symbols: HMGB6 | HMGB6; transcription factor |
chr5:7888712-7890111 REVERSE
Length = 242
Score = 60 bits (144), Expect = 6e-010
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +3
Query: 273 VFMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVY 452
+FM +FR+ +K EH N K GGEKWKSL++ EK Y KA + K EYNK+++
Sbjct: 124 IFMSDFRKTFKSEH-NGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESN 182
Query: 453 NKKQAEGD 476
+ + E D
Sbjct: 183 DADEEEED 190
>TAIR9_protein||AT2G34450.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr2:14527918-14529448 REVERSE
Length = 152
Score = 59 bits (142), Expect = 1e-009
Identities = 24/66 (36%), Positives = 45/66 (68%)
Frame = +3
Query: 276 FMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVYN 455
F+++FR++Y++E+P+ KS+ +GK GEKWK+++ EK Y A +++ E+++ M Y
Sbjct: 73 FLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYT 132
Query: 456 KKQAEG 473
K+ G
Sbjct: 133 KRMESG 138
>TAIR9_protein||AT2G34450.2 | Symbols: | high mobility group (HMG1/2) family
protein | chr2:14527918-14529448 REVERSE
Length = 153
Score = 55 bits (131), Expect = 2e-008
Identities = 24/67 (35%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Frame = +3
Query: 276 FMEEFREKYKKEHPNNKSV-AAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDVY 452
F+++FR++Y++E+P+ KS+ +GK GEKWK+++ EK Y A +++ E+++ M Y
Sbjct: 73 FLDDFRKQYQEENPDVKSMREVIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEY 132
Query: 453 NKKQAEG 473
K+ G
Sbjct: 133 TKRMESG 139
>TAIR9_protein||AT4G23800.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr4:12390228-12392516 FORWARD
Length = 457
Score = 55 bits (131), Expect = 2e-008
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Frame = +3
Query: 207 EQASQEGWERSKQA*EACE------CLLVFMEEFREKYKKEHPNNKSVAAVGKAGGEKWK 368
++A Q+ +++K+ + + LV+ E R ++E NKSV V K GE+WK
Sbjct: 236 QEAEQDNKKKNKKEKDPLKPKHPVSAFLVYANERRAALREE---NKSVVEVAKITGEEWK 292
Query: 369 SLSDAEKAPYQAKAEKRKVEYNKNMDVYNKKQAE 470
+LSD +KAPY+ A+K K Y + M+ Y + + E
Sbjct: 293 NLSDKKKAPYEKVAKKNKETYLQAMEEYKRTKEE 326
Score = 47 bits (110), Expect = 6e-006
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = +3
Query: 273 VFMEEFREKYKKEHP--NNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMD 446
+F ++ R+K +E P NN +V A+ KWK LS+ EK Y KA K Y K ++
Sbjct: 388 LFSKDERKKLTEERPGTNNATVTALISL---KWKELSEEEKQVYNGKAAKLMEAYKKEVE 444
Query: 447 VYNKKQA 467
YNKK A
Sbjct: 445 AYNKKSA 451
>TAIR9_protein||AT4G11080.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr4:6760898-6763272 REVERSE
Length = 447
Score = 52 bits (124), Expect = 1e-007
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Frame = +3
Query: 270 LVFMEEFREKYKKEHPNNKSVAAVGKAGGEKWKSLSDAEKAPYQAKAEKRKVEYNKNMDV 449
L++ E R K E NKSV V K GE+WK+LS+ +KAPY A+K K Y + M+
Sbjct: 254 LIYANERRAALKGE---NKSVIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIYLQEMEG 310
Query: 450 YNKKQAE 470
Y + + E
Sbjct: 311 YKRTKEE 317
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,604,738,094
Number of Sequences: 33410
Number of Extensions: 4604738094
Number of Successful Extensions: 252423256
Number of sequences better than 0.0: 0
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