BLASTX 7.6.2
Query= RU27048 /QuerySize=606
(605 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G05880.1 | Symbols: RCI2A | RCI2A (RARE-COLD-I... 75 2e-014
TAIR9_protein||AT3G05890.1 | Symbols: RCI2B | RCI2B (RARE-COLD-I... 74 8e-014
TAIR9_protein||AT2G38905.1 | Symbols: | hydrophobic protein, pu... 66 1e-011
TAIR9_protein||AT1G57550.1 | Symbols: | hydrophobic protein, pu... 64 8e-011
TAIR9_protein||AT2G24040.1 | Symbols: | hydrophobic protein, pu... 53 1e-007
TAIR9_protein||AT4G28088.1 | Symbols: | hydrophobic protein, pu... 50 7e-007
TAIR9_protein||AT4G30660.1 | Symbols: | hydrophobic protein, pu... 49 2e-006
TAIR9_protein||AT4G30660.2 | Symbols: | hydrophobic protein, pu... 49 2e-006
TAIR9_protein||AT4G30650.1 | Symbols: | hydrophobic protein, pu... 47 6e-006
>TAIR9_protein||AT3G05880.1 | Symbols: RCI2A | RCI2A (RARE-COLD-INDUCIBLE 2A) |
chr3:1756195-1756494 REVERSE
Length = 55
Score = 75 bits (184), Expect = 2e-014
Identities = 34/53 (64%), Positives = 38/53 (71%)
Frame = +3
Query: 90 TATFXXXXXXXXXXXXGVFLRFGCGVEFWICLILTLFGYLPGIIYAIWAITK* 248
TATF GVFLRFGCGVEFWICL+LTL GY+PGIIYAI+ +TK*
Sbjct: 3 TATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK* 55
>TAIR9_protein||AT3G05890.1 | Symbols: RCI2B | RCI2B (RARE-COLD-INDUCIBLE 2B) |
chr3:1758179-1758452 REVERSE
Length = 55
Score = 74 bits (179), Expect = 8e-014
Identities = 34/53 (64%), Positives = 38/53 (71%)
Frame = +3
Query: 90 TATFXXXXXXXXXXXXGVFLRFGCGVEFWICLILTLFGYLPGIIYAIWAITK* 248
TATF GVFL+FGC VEFWICLILTLFGYLPGI+YA++ ITK*
Sbjct: 3 TATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK* 55
>TAIR9_protein||AT2G38905.1 | Symbols: | hydrophobic protein, putative / low
temperature and salt responsive protein, putative |
chr2:16244218-16244472 REVERSE
Length = 55
Score = 66 bits (160), Expect = 1e-011
Identities = 26/34 (76%), Positives = 32/34 (94%)
Frame = +3
Query: 138 GVFLRFGCGVEFWICLILTLFGYLPGIIYAIWAI 239
GVFLR+GCGVEFWICL+LT+ GY+PGIIYAI+ +
Sbjct: 19 GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52
>TAIR9_protein||AT1G57550.1 | Symbols: | hydrophobic protein, putative / low
temperature and salt responsive protein, putative |
chr1:21312541-21312809 REVERSE
Length = 53
Score = 64 bits (153), Expect = 8e-011
Identities = 24/37 (64%), Positives = 33/37 (89%)
Frame = +3
Query: 138 GVFLRFGCGVEFWICLILTLFGYLPGIIYAIWAITK* 248
GVFLR+G G+EFW+CL+LTLF ++PG+IYAI+ +TK*
Sbjct: 17 GVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK* 53
>TAIR9_protein||AT2G24040.1 | Symbols: | hydrophobic protein, putative / low
temperature and salt responsive protein, putative |
chr2:10224028-10224531 FORWARD
Length = 76
Score = 53 bits (126), Expect = 1e-007
Identities = 29/44 (65%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +3
Query: 138 GVFLRFG-CGVEFWICLILTLFGYLPGIIYAIWAITK*CSQSYF 266
GV LR G C VEF+ICLILT GYLPGIIYAI+AI YF
Sbjct: 21 GVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHRDEYF 64
>TAIR9_protein||AT4G28088.1 | Symbols: | hydrophobic protein, putative / low
temperature and salt responsive protein, putative |
chr4:13961244-13961560 REVERSE
Length = 78
Score = 50 bits (119), Expect = 7e-007
Identities = 25/35 (71%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Frame = +3
Query: 138 GVFLRFG-CGVEFWICLILTLFGYLPGIIYAIWAI 239
GV LR G C EF ICLILTL GY+PGIIYA++AI
Sbjct: 21 GVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAI 55
>TAIR9_protein||AT4G30660.1 | Symbols: | hydrophobic protein, putative / low
temperature and salt responsive protein, putative |
chr4:14955470-14955944 FORWARD
Length = 75
Score = 49 bits (115), Expect = 2e-006
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Frame = +3
Query: 138 GVFLRFG-CGVEFWICLILTLFGYLPGIIYAIWAITK*CSQSYF 266
GV R G C VEF ICL+LT+ GY+PGIIYAI+ I + YF
Sbjct: 21 GVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHREEYF 64
>TAIR9_protein||AT4G30660.2 | Symbols: | hydrophobic protein, putative / low
temperature and salt responsive protein, putative |
chr4:14955470-14955944 FORWARD
Length = 75
Score = 49 bits (115), Expect = 2e-006
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Frame = +3
Query: 138 GVFLRFG-CGVEFWICLILTLFGYLPGIIYAIWAITK*CSQSYF 266
GV R G C VEF ICL+LT+ GY+PGIIYAI+ I + YF
Sbjct: 21 GVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHREEYF 64
>TAIR9_protein||AT4G30650.1 | Symbols: | hydrophobic protein, putative / low
temperature and salt responsive protein, putative |
chr4:14954403-14954698 FORWARD
Length = 74
Score = 47 bits (111), Expect = 6e-006
Identities = 22/35 (62%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Frame = +3
Query: 138 GVFLRFG-CGVEFWICLILTLFGYLPGIIYAIWAI 239
GV L+ G C VEF ICL+LT+ GY+PGIIYA++ I
Sbjct: 21 GVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,633,441,353
Number of Sequences: 33410
Number of Extensions: 4633441353
Number of Successful Extensions: 252771347
Number of sequences better than 0.0: 0
|