BLASTX 7.6.2
Query= RU28426 /QuerySize=160
(159 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G02990.1 | Symbols: | mitochondrial transcrip... 99 5e-022
TAIR9_protein||AT2G44020.1 | Symbols: | mitochondrial transcrip... 71 1e-013
TAIR9_protein||AT2G34620.1 | Symbols: | mitochondrial transcrip... 47 2e-006
TAIR9_protein||AT4G14605.1 | Symbols: | FUNCTIONS IN: molecular... 45 8e-006
>TAIR9_protein||AT4G02990.1 | Symbols: | mitochondrial transcription
termination factor family protein / mTERF family protein |
chr4:1322158-1323783 FORWARD
Length = 542
Score = 99 bits (245), Expect = 5e-022
Identities = 43/52 (82%), Positives = 47/52 (90%)
Frame = -3
Query: 157 RPLDDLVAFPAFFTYGLESTIKPRHKMVTKKGLKCSLGWLLNCSDEKFEQRM 2
RPL DLV FPAFFTYGLEST+KPRHK + KKG+KCSL W+LNCSDEKFEQRM
Sbjct: 443 RPLQDLVDFPAFFTYGLESTVKPRHKKIIKKGIKCSLAWMLNCSDEKFEQRM 494
>TAIR9_protein||AT2G44020.1 | Symbols: | mitochondrial transcription
termination factor-related / mTERF-related | chr2:18217737-18219260
REVERSE
Length = 508
Score = 71 bits (173), Expect = 1e-013
Identities = 28/52 (53%), Positives = 41/52 (78%)
Frame = -3
Query: 157 RPLDDLVAFPAFFTYGLESTIKPRHKMVTKKGLKCSLGWLLNCSDEKFEQRM 2
RP+ +LV +P +FTY LES IKPR++ + KG++ SL W LNCSD++FE+R+
Sbjct: 408 RPMKELVEYPEYFTYSLESRIKPRYQKLQSKGIRSSLNWFLNCSDQRFEERL 459
>TAIR9_protein||AT2G34620.1 | Symbols: | mitochondrial transcription
termination factor-related / mTERF-related | chr2:14577196-14578203
FORWARD
Length = 304
Score = 47 bits (110), Expect = 2e-006
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = -3
Query: 151 LDDLVAFPAFFTYGLESTIKPRHKMVTKKGLKCSLGWLLNCSDEKFEQ 8
L++L FP +F + LE IKPRH ++GL+ L +L +DE+FEQ
Sbjct: 245 LENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQ 292
>TAIR9_protein||AT4G14605.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Mitochodrial transcription termination factor-related
(InterPro:IPR003690); BEST Arabidopsis thaliana protein match is:
EMB2219 (embryo defective 2219) (TAIR:AT2G21710.1); Has 760 Blast hits
to 374 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 99;
Fungi - 0; Plants - 624; Viruses - 0; Other Eukaryotes - 37 (source:
NCBI BLink). | chr4:8378815-8380564 FORWARD
Length = 494
Score = 45 bits (105), Expect = 8e-006
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = -3
Query: 154 PLDDLVAFPAFFTYGLESTIKPRHKMVTKKGLKCSLGWLLNCSDEKFEQ 8
P +LV FP FF Y L+ IKPR+++V + G++ L +L+ S +FE+
Sbjct: 421 PKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEK 469
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,746,010,162
Number of Sequences: 33410
Number of Extensions: 4746010162
Number of Successful Extensions: 253093100
Number of sequences better than 0.0: 0
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