BLASTX 7.6.2
Query= RU28535 /QuerySize=146
(145 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G43010.1 | Symbols: PIF4, SRL2 | PIF4 (phytoch... 85 9e-018
TAIR9_protein||AT2G43010.2 | Symbols: PIF4, SRL2 | PIF4 (phytoch... 85 9e-018
TAIR9_protein||AT3G59060.1 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCH... 85 9e-018
TAIR9_protein||AT3G59060.2 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCH... 85 9e-018
TAIR9_protein||AT3G59060.3 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCH... 85 9e-018
TAIR9_protein||AT3G59060.4 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCH... 85 9e-018
TAIR9_protein||AT4G36930.1 | Symbols: SPT | SPT (SPATULA); DNA b... 72 6e-014
TAIR9_protein||AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | PIF3 (P... 70 2e-013
TAIR9_protein||AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | PIF3 (P... 70 2e-013
TAIR9_protein||AT2G20180.2 | Symbols: PIL5 | PIL5 (PHYTOCHROME I... 69 5e-013
TAIR9_protein||AT2G20180.1 | Symbols: PIL5, PIF1 | PIL5 (PHYTOCH... 69 5e-013
TAIR9_protein||AT4G28811.1 | Symbols: | transcription regulator... 64 2e-011
TAIR9_protein||AT4G28815.1 | Symbols: | transcription regulator... 61 1e-010
TAIR9_protein||AT4G28800.1 | Symbols: | transcription factor | ... 61 1e-010
TAIR9_protein||AT4G28790.2 | Symbols: | basic helix-loop-helix ... 60 2e-010
TAIR9_protein||AT4G28790.1 | Symbols: | basic helix-loop-helix ... 60 2e-010
TAIR9_protein||AT5G67110.1 | Symbols: ALC | ALC (ALCATRAZ); DNA ... 60 3e-010
TAIR9_protein||AT5G67110.2 | Symbols: ALC | ALC (ALCATRAZ); DNA ... 56 5e-009
TAIR9_protein||AT5G61270.1 | Symbols: PIF7 | PIF7 (PHYTOCHROME-I... 55 1e-008
TAIR9_protein||AT5G61270.2 | Symbols: PIF7 | PIF7 (PHYTOCHROME-I... 55 1e-008
TAIR9_protein||AT2G24260.1 | Symbols: | basic helix-loop-helix ... 53 4e-008
TAIR9_protein||AT5G58010.1 | Symbols: | basic helix-loop-helix ... 52 7e-008
TAIR9_protein||AT4G30980.1 | Symbols: | basic helix-loop-helix ... 52 9e-008
TAIR9_protein||AT4G02590.1 | Symbols: UNE12 | UNE12 (unfertilize... 48 1e-006
TAIR9_protein||AT4G02590.2 | Symbols: UNE12 | UNE12 (unfertilize... 48 1e-006
TAIR9_protein||AT4G02590.3 | Symbols: UNE12 | UNE12 (unfertilize... 48 1e-006
TAIR9_protein||AT1G03040.1 | Symbols: | basic helix-loop-helix ... 47 2e-006
>TAIR9_protein||AT2G43010.1 | Symbols: PIF4, SRL2 | PIF4 (phytochrome
interacting factor 4); DNA binding / protein binding / transcription
factor | chr2:17887003-17888823 FORWARD
Length = 431
Score = 85 bits (208), Expect = 9e-018
Identities = 41/48 (85%), Positives = 45/48 (93%)
Frame = -2
Query: 144 NKPAQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
NK QRSGS+RR+RAAEVHNLSERRRRDRINE+MKALQELIPH +KTD
Sbjct: 244 NKSNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTD 291
>TAIR9_protein||AT2G43010.2 | Symbols: PIF4, SRL2 | PIF4 (phytochrome
interacting factor 4); DNA binding / protein binding / transcription
factor | chr2:17887003-17888823 FORWARD
Length = 429
Score = 85 bits (208), Expect = 9e-018
Identities = 41/48 (85%), Positives = 45/48 (93%)
Frame = -2
Query: 144 NKPAQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
NK QRSGS+RR+RAAEVHNLSERRRRDRINE+MKALQELIPH +KTD
Sbjct: 244 NKSNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTD 291
>TAIR9_protein||AT3G59060.1 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME
INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor |
chr3:21828189-21829895 REVERSE
Length = 443
Score = 85 bits (208), Expect = 9e-018
Identities = 40/48 (83%), Positives = 46/48 (95%)
Frame = -2
Query: 144 NKPAQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
NK +QRSGS+RR+RAAEVHNLSERRRRDRINE+MKALQELIPH ++TD
Sbjct: 243 NKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTD 290
>TAIR9_protein||AT3G59060.2 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME
INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor |
chr3:21828189-21829895 REVERSE
Length = 445
Score = 85 bits (208), Expect = 9e-018
Identities = 40/48 (83%), Positives = 46/48 (95%)
Frame = -2
Query: 144 NKPAQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
NK +QRSGS+RR+RAAEVHNLSERRRRDRINE+MKALQELIPH ++TD
Sbjct: 243 NKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTD 290
>TAIR9_protein||AT3G59060.3 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME
INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor |
chr3:21828189-21829895 REVERSE
Length = 445
Score = 85 bits (208), Expect = 9e-018
Identities = 40/48 (83%), Positives = 46/48 (95%)
Frame = -2
Query: 144 NKPAQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
NK +QRSGS+RR+RAAEVHNLSERRRRDRINE+MKALQELIPH ++TD
Sbjct: 243 NKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTD 290
>TAIR9_protein||AT3G59060.4 | Symbols: PIL6, PIF5 | PIL6 (PHYTOCHROME
INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor |
chr3:21828189-21829895 REVERSE
Length = 445
Score = 85 bits (208), Expect = 9e-018
Identities = 40/48 (83%), Positives = 46/48 (95%)
Frame = -2
Query: 144 NKPAQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
NK +QRSGS+RR+RAAEVHNLSERRRRDRINE+MKALQELIPH ++TD
Sbjct: 243 NKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTD 290
>TAIR9_protein||AT4G36930.1 | Symbols: SPT | SPT (SPATULA); DNA binding /
transcription factor | chr4:17414167-17415945 FORWARD
Length = 374
Score = 72 bits (175), Expect = 6e-014
Identities = 37/46 (80%), Positives = 41/46 (89%), Gaps = 1/46 (2%)
Frame = -2
Query: 138 PAQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
P+ RS SS+R RAAEVHNLSE+RRR RINEKMKALQ LIP+SNKTD
Sbjct: 187 PSSRS-SSKRCRAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTD 231
>TAIR9_protein||AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME
INTERACTING FACTOR 3); DNA binding / protein binding / transcription
factor/ transcription regulator | chr1:3077216-3079367 FORWARD
Length = 525
Score = 70 bits (170), Expect = 2e-013
Identities = 33/46 (71%), Positives = 40/46 (86%)
Frame = -2
Query: 138 PAQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
P++ S+R+R+AEVHNLSERRRRDRINEKM+ALQELIP+ NK D
Sbjct: 332 PSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVD 377
>TAIR9_protein||AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME
INTERACTING FACTOR 3); DNA binding / protein binding / transcription
factor/ transcription regulator | chr1:3077216-3079367 FORWARD
Length = 525
Score = 70 bits (170), Expect = 2e-013
Identities = 33/46 (71%), Positives = 40/46 (86%)
Frame = -2
Query: 138 PAQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
P++ S+R+R+AEVHNLSERRRRDRINEKM+ALQELIP+ NK D
Sbjct: 332 PSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVD 377
>TAIR9_protein||AT2G20180.2 | Symbols: PIL5 | PIL5 (PHYTOCHROME INTERACTING
FACTOR 3-LIKE 5); DNA binding / phytochrome binding / transcription
factor | chr2:8704525-8706538 REVERSE
Length = 479
Score = 69 bits (167), Expect = 5e-013
Identities = 32/40 (80%), Positives = 38/40 (95%)
Frame = -2
Query: 120 SSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
S++R+RAAEVHNLSER+RRDRINE+MKALQELIP NK+D
Sbjct: 279 STKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSD 318
>TAIR9_protein||AT2G20180.1 | Symbols: PIL5, PIF1 | PIL5 (PHYTOCHROME
INTERACTING FACTOR 3-LIKE 5); DNA binding / phytochrome binding /
transcription factor | chr2:8704525-8706237 REVERSE
Length = 408
Score = 69 bits (167), Expect = 5e-013
Identities = 32/40 (80%), Positives = 38/40 (95%)
Frame = -2
Query: 120 SSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
S++R+RAAEVHNLSER+RRDRINE+MKALQELIP NK+D
Sbjct: 208 STKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSD 247
>TAIR9_protein||AT4G28811.1 | Symbols: | transcription regulator |
chr4:14225335-14227840 FORWARD
Length = 545
Score = 64 bits (154), Expect = 2e-011
Identities = 30/45 (66%), Positives = 37/45 (82%)
Frame = -2
Query: 135 AQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
A S S +R+RAA++HNLSERRRR+RINE+MK LQEL+P KTD
Sbjct: 347 AHGSTSRKRSRAADMHNLSERRRRERINERMKTLQELLPRCRKTD 391
>TAIR9_protein||AT4G28815.1 | Symbols: | transcription regulator |
chr4:14228719-14230288 FORWARD
Length = 308
Score = 61 bits (147), Expect = 1e-010
Identities = 28/44 (63%), Positives = 38/44 (86%)
Frame = -2
Query: 135 AQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKT 4
A+ S S +R+RAAE+HNL+ERRRR++INE+MK LQ+LIP NK+
Sbjct: 140 ARGSTSRKRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKS 183
>TAIR9_protein||AT4G28800.1 | Symbols: | transcription factor |
chr4:14221970-14224075 FORWARD
Length = 446
Score = 61 bits (146), Expect = 1e-010
Identities = 28/44 (63%), Positives = 37/44 (84%)
Frame = -2
Query: 135 AQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKT 4
A+ S S +R+R AE+HNL+ERRRR++INEKMK LQ+LIP NK+
Sbjct: 245 ARGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKS 288
>TAIR9_protein||AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:14218329-14219887 FORWARD
Length = 341
Score = 60 bits (145), Expect = 2e-010
Identities = 30/45 (66%), Positives = 36/45 (80%)
Frame = -2
Query: 135 AQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
A+ S SS+R+RAA +H LSERRRR +INE MKALQEL+P KTD
Sbjct: 267 ARDSTSSKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTD 311
>TAIR9_protein||AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:14218329-14220173 FORWARD
Length = 414
Score = 60 bits (145), Expect = 2e-010
Identities = 30/45 (66%), Positives = 36/45 (80%)
Frame = -2
Query: 135 AQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
A+ S SS+R+RAA +H LSERRRR +INE MKALQEL+P KTD
Sbjct: 267 ARDSTSSKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTD 311
>TAIR9_protein||AT5G67110.1 | Symbols: ALC | ALC (ALCATRAZ); DNA binding /
transcription factor | chr5:26785332-26786338 REVERSE
Length = 211
Score = 60 bits (143), Expect = 3e-010
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = -2
Query: 135 AQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
A++ S +R A+ HNLSE++RR +INEKMKALQ+LIP+SNKTD
Sbjct: 83 AKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTD 127
>TAIR9_protein||AT5G67110.2 | Symbols: ALC | ALC (ALCATRAZ); DNA binding /
transcription factor | chr5:26785684-26786338 REVERSE
Length = 151
Score = 56 bits (133), Expect = 5e-009
Identities = 26/45 (57%), Positives = 36/45 (80%)
Frame = -2
Query: 135 AQRSGSSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
A++ S +R A+ HNLSE++RR +INEKMKALQ+LIP+SNK +
Sbjct: 83 AKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKVN 127
>TAIR9_protein||AT5G61270.1 | Symbols: PIF7 | PIF7 (PHYTOCHROME-INTERACTING
FACTOR7); DNA binding / double-stranded DNA binding / transcription
factor | chr5:24638873-24640439 REVERSE
Length = 367
Score = 55 bits (130), Expect = 1e-008
Identities = 24/40 (60%), Positives = 33/40 (82%)
Frame = -2
Query: 120 SSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
+ RR RAA +HN SERRRRDRIN++M+ LQ+L+P ++K D
Sbjct: 161 NGRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKAD 200
>TAIR9_protein||AT5G61270.2 | Symbols: PIF7 | PIF7 (PHYTOCHROME-INTERACTING
FACTOR7); DNA binding / double-stranded DNA binding / transcription
factor | chr5:24638873-24640031 REVERSE
Length = 279
Score = 55 bits (130), Expect = 1e-008
Identities = 24/40 (60%), Positives = 33/40 (82%)
Frame = -2
Query: 120 SSRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
+ RR RAA +HN SERRRRDRIN++M+ LQ+L+P ++K D
Sbjct: 73 NGRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKAD 112
>TAIR9_protein||AT2G24260.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr2:10319646-10322177 REVERSE
Length = 351
Score = 53 bits (125), Expect = 4e-008
Identities = 23/39 (58%), Positives = 33/39 (84%)
Frame = -2
Query: 117 SRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
+RR +A + H+++ER RR+RI E+MKALQEL+P+ NKTD
Sbjct: 140 ARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTD 178
>TAIR9_protein||AT5G58010.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr5:23483670-23484889 REVERSE
Length = 298
Score = 52 bits (123), Expect = 7e-008
Identities = 22/39 (56%), Positives = 34/39 (87%)
Frame = -2
Query: 117 SRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
+RR +A + H+++ER RR+RI E+MK+LQEL+P++NKTD
Sbjct: 101 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTD 139
>TAIR9_protein||AT4G30980.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr4:15079489-15081606 REVERSE
Length = 311
Score = 52 bits (122), Expect = 9e-008
Identities = 22/39 (56%), Positives = 33/39 (84%)
Frame = -2
Query: 117 SRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
+RR +A + H+++ER RR+RI E+MK+LQEL+P+ NKTD
Sbjct: 132 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTD 170
>TAIR9_protein||AT4G02590.1 | Symbols: UNE12 | UNE12 (unfertilized embryo sac
12); DNA binding / transcription factor | chr4:1137968-1140306 REVERSE
Length = 311
Score = 48 bits (113), Expect = 1e-006
Identities = 21/39 (53%), Positives = 32/39 (82%)
Frame = -2
Query: 117 SRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
+RR +A + H+++ER RR+RI E+++ALQEL+P NKTD
Sbjct: 148 ARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTD 186
>TAIR9_protein||AT4G02590.2 | Symbols: UNE12 | UNE12 (unfertilized embryo sac
12); DNA binding / transcription factor | chr4:1137968-1140306 REVERSE
Length = 311
Score = 48 bits (113), Expect = 1e-006
Identities = 21/39 (53%), Positives = 32/39 (82%)
Frame = -2
Query: 117 SRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
+RR +A + H+++ER RR+RI E+++ALQEL+P NKTD
Sbjct: 148 ARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTD 186
>TAIR9_protein||AT4G02590.3 | Symbols: UNE12 | UNE12 (unfertilized embryo sac
12); DNA binding / transcription factor | chr4:1137968-1140117 REVERSE
Length = 248
Score = 48 bits (113), Expect = 1e-006
Identities = 21/39 (53%), Positives = 32/39 (82%)
Frame = -2
Query: 117 SRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
+RR +A + H+++ER RR+RI E+++ALQEL+P NKTD
Sbjct: 85 ARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTD 123
>TAIR9_protein||AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) family
protein | chr1:704279-706457 REVERSE
Length = 303
Score = 47 bits (110), Expect = 2e-006
Identities = 20/39 (51%), Positives = 32/39 (82%)
Frame = -2
Query: 117 SRRTRAAEVHNLSERRRRDRINEKMKALQELIPHSNKTD 1
+RR +A + H+++ER RR+RI E++++LQEL+P NKTD
Sbjct: 146 ARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTD 184
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,746,010,162
Number of Sequences: 33410
Number of Extensions: 4746010162
Number of Successful Extensions: 253093100
Number of sequences better than 0.0: 0
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