BLASTX 7.6.2
Query= RU29054 /QuerySize=240
(239 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2... 141 1e-034
TAIR9_protein||AT4G31900.1 | Symbols: | chromatin remodeling fa... 108 1e-024
TAIR9_protein||AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REM... 89 6e-019
TAIR9_protein||AT2G13370.1 | Symbols: CHR5 | CHR5 (chromatin rem... 75 9e-015
TAIR9_protein||AT5G18620.1 | Symbols: CHR17 | CHR17 (CHROMATIN R... 74 2e-014
TAIR9_protein||AT5G18620.2 | Symbols: CHR17 | CHR17 (CHROMATIN R... 74 2e-014
TAIR9_protein||AT3G06400.1 | Symbols: CHR11 | CHR11 (CHROMATIN-R... 72 8e-014
TAIR9_protein||AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 (IN... 58 1e-009
TAIR9_protein||AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | PIE1 ... 50 2e-007
TAIR9_protein||AT5G19310.1 | Symbols: | homeotic gene regulator... 50 3e-007
>TAIR9_protein||AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | PKL
(PICKLE); ATPase/ DNA binding / DNA helicase | chr2:10714411-10723763
FORWARD
Length = 1385
Score = 141 bits (353), Expect = 1e-034
Identities = 66/79 (83%), Positives = 75/79 (94%)
Frame = -2
Query: 238 LEEFQEEFKDINQEEQISRLHKILAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYY 59
LEEFQEEFKDINQEEQISRLHK+LAPHLLRRVKKDVMK++PPKKELILR++LSS QKEYY
Sbjct: 476 LEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYY 535
Query: 58 KAILTRNYQILTRRGGGML 2
KAI TRNYQ+LT++GG +
Sbjct: 536 KAIFTRNYQVLTKKGGAQI 554
>TAIR9_protein||AT4G31900.1 | Symbols: | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD
Length = 1203
Score = 108 bits (268), Expect = 1e-024
Identities = 49/70 (70%), Positives = 67/70 (95%), Gaps = 1/70 (1%)
Frame = -2
Query: 223 EEFKDINQEEQISRLHKILAPHLLRRVKKDVMKE-LPPKKELILRIELSSKQKEYYKAIL 47
E+F+DIN+EEQISRLH++LAPHLLRR+KKDV+K+ +PPKKELILR+++SS+QKE YKA++
Sbjct: 411 EKFQDINKEEQISRLHQMLAPHLLRRLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAVI 470
Query: 46 TRNYQILTRR 17
T NYQ+LT++
Sbjct: 471 TNNYQVLTKK 480
>TAIR9_protein||AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP
binding / DNA binding / chromatin binding / helicase/ nucleic acid
binding / protein binding / zinc ion binding | chr5:18083659-18092162
REVERSE
Length = 2243
Score = 89 bits (218), Expect = 6e-019
Identities = 39/78 (50%), Positives = 57/78 (73%)
Frame = -2
Query: 238 LEEFQEEFKDINQEEQISRLHKILAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYY 59
L F+E F D+ E++ L K++APH+LRR+KKD M+ +PPK E ++ +EL+S Q EYY
Sbjct: 883 LSSFEERFHDLTSAEKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELTSIQAEYY 942
Query: 58 KAILTRNYQILTRRGGGM 5
+A+LT+NYQIL G G+
Sbjct: 943 RAMLTKNYQILRNIGKGV 960
>TAIR9_protein||AT2G13370.1 | Symbols: CHR5 | CHR5 (chromatin remodeling 5); ATP
binding / DNA binding / chromatin binding / helicase/ nucleic acid
binding | chr2:5544601-5555543 REVERSE
Length = 1725
Score = 75 bits (182), Expect = 9e-015
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Frame = -2
Query: 232 EFQEEFKDIN--QEEQISRLHKILAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYY 59
EF E +K+++ E +++ LH L PH+LRRV KDV K LPPK E ILR+E+S QK+YY
Sbjct: 816 EFVENYKNLSSFNESELANLHLELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYY 875
Query: 58 KAILTRNYQILTR 20
K IL RN+ L +
Sbjct: 876 KWILERNFHDLNK 888
>TAIR9_protein||AT5G18620.1 | Symbols: CHR17 | CHR17 (CHROMATIN REMODELING
FACTOR17); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/
hydrolase, acting on acid anhydrides, in phosphorus-containing
anhydrides / nucleic acid binding / nucleosome binding |
chr5:6196190-6202058 REVERSE
Length = 1070
Score = 74 bits (180), Expect = 2e-014
Identities = 34/66 (51%), Positives = 50/66 (75%), Gaps = 2/66 (3%)
Frame = -2
Query: 205 NQEEQISRLHKILAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYYKAILTRNYQIL 26
+Q+E + +LHK+L P LLRR+K DV K LPPKKE IL++ +S QK+YYKA+L ++ +++
Sbjct: 390 DQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVV 449
Query: 25 TRRGGG 8
GGG
Sbjct: 450 --NGGG 453
>TAIR9_protein||AT5G18620.2 | Symbols: CHR17 | CHR17 (CHROMATIN REMODELING
FACTOR17); ATP binding / DNA binding / DNA-dependent ATPase/ helicase/
hydrolase, acting on acid anhydrides, in phosphorus-containing
anhydrides / nucleic acid binding / nucleosome binding |
chr5:6196190-6202058 REVERSE
Length = 1073
Score = 74 bits (180), Expect = 2e-014
Identities = 34/66 (51%), Positives = 50/66 (75%), Gaps = 2/66 (3%)
Frame = -2
Query: 205 NQEEQISRLHKILAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYYKAILTRNYQIL 26
+Q+E + +LHK+L P LLRR+K DV K LPPKKE IL++ +S QK+YYKA+L ++ +++
Sbjct: 390 DQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVV 449
Query: 25 TRRGGG 8
GGG
Sbjct: 450 --NGGG 453
>TAIR9_protein||AT3G06400.1 | Symbols: CHR11 | CHR11 (CHROMATIN-REMODELING
PROTEIN 11); ATP binding / DNA binding / DNA-dependent ATPase/
helicase/ hydrolase, acting on acid anhydrides, in
phosphorus-containing anhydrides / nucleic acid binding / nucleosome
binding | chr3:1941066-1946700 FORWARD
Length = 1056
Score = 72 bits (174), Expect = 8e-014
Identities = 32/64 (50%), Positives = 47/64 (73%)
Frame = -2
Query: 205 NQEEQISRLHKILAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYYKAILTRNYQIL 26
+Q+E + +LHK+L P LLRR+K DV K LPPKKE IL++ +S QK+YYKA+L ++ + +
Sbjct: 385 DQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAV 444
Query: 25 TRRG 14
G
Sbjct: 445 NAGG 448
>TAIR9_protein||AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 (INO80 ORTHOLOG);
ATP binding / DNA binding / helicase/ nucleic acid binding |
chr3:21199612-21207635 FORWARD
Length = 1508
Score = 58 bits (138), Expect = 1e-009
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = -2
Query: 199 EEQISRLHKILAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYYKAI 50
E Q++RLH IL P +LRRVKKDV+ EL K E+ + +LSS+Q+ +Y+AI
Sbjct: 797 EHQLNRLHAILKPFMLRRVKKDVVSELTTKTEVTVHCKLSSRQQAFYQAI 846
>TAIR9_protein||AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | PIE1
(PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding
/ helicase/ nucleic acid binding | chr3:4065636-4073992 FORWARD
Length = 2056
Score = 50 bits (119), Expect = 2e-007
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = -2
Query: 199 EEQISRLHKILAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYYK 56
+E I RLH +L P LLRR+K+DV K+LP K E ++ LS +Q+ Y+
Sbjct: 741 KEVIDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYE 788
>TAIR9_protein||AT5G19310.1 | Symbols: | homeotic gene regulator, putative |
chr5:6498906-6503432 FORWARD
Length = 1065
Score = 50 bits (117), Expect = 3e-007
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = -2
Query: 190 ISRLHKILAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYYKAI 50
I+RLH ++ P LLRR K +V K LP K ++IL+ ++S+ QK YYK +
Sbjct: 596 INRLHHVIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQV 642
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,805,693,934
Number of Sequences: 33410
Number of Extensions: 4805693934
Number of Successful Extensions: 258754419
Number of sequences better than 0.0: 0
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